Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   MPG20_RS04985 Genome accession   NZ_CP094171
Coordinates   1051063..1052238 (+) Length   391 a.a.
NCBI ID   WP_245073736.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe0003     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1046063..1057238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG20_RS04960 (MPG20_04960) - 1046405..1047301 (+) 897 WP_000697547.1 OriC activity response regulator -
  MPG20_RS04965 (MPG20_04965) - 1047527..1048393 (+) 867 WP_245074902.1 5'-3' exonuclease -
  MPG20_RS04970 (MPG20_04970) - 1048401..1049651 (-) 1251 WP_245073734.1 outer membrane family protein -
  MPG20_RS04975 (MPG20_04975) - 1049819..1050685 (+) 867 WP_231245559.1 DnaJ C-terminal domain-containing protein -
  MPG20_RS04980 (MPG20_04980) - 1050695..1051066 (+) 372 WP_000332994.1 helix-turn-helix transcriptional regulator -
  MPG20_RS04985 (MPG20_04985) rarA 1051063..1052238 (+) 1176 WP_245073736.1 replication-associated recombination protein A Machinery gene
  MPG20_RS04990 (MPG20_04990) fur 1052398..1052850 (+) 453 WP_000824985.1 ferric iron uptake transcriptional regulator -
  MPG20_RS04995 (MPG20_04995) - 1052869..1053366 (-) 498 WP_212851671.1 DUF2147 domain-containing protein -
  MPG20_RS05000 (MPG20_05000) - 1053363..1053899 (-) 537 WP_245073738.1 YhcH/YjgK/YiaL family protein -
  MPG20_RS05005 (MPG20_05005) fliY 1053927..1054790 (-) 864 WP_245073739.1 flagellar motor switch protein FliY -
  MPG20_RS05010 (MPG20_05010) fliM 1054794..1055858 (-) 1065 WP_050854103.1 flagellar motor switch protein FliM -
  MPG20_RS05015 (MPG20_05015) - 1055851..1056627 (-) 777 WP_000602378.1 RNA polymerase sigma factor FliA -
  MPG20_RS05020 (MPG20_05020) - 1056605..1056919 (-) 315 WP_000868000.1 hypothetical protein -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43919.54 Da        Isoelectric Point: 7.8110

>NTDB_id=576945 MPG20_RS04985 WP_245073736.1 1051063..1052238(+) (rarA) [Helicobacter pylori strain Hpfe0003]
MSLISLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDKLCAK
ALTLLKKQIEPSAKTYLLNNSAGDARALLNLLDLSAKIEDPITLETLQSLRPHSPNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLATSCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDYIQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=576945 MPG20_RS04985 WP_245073736.1 1051063..1052238(+) (rarA) [Helicobacter pylori strain Hpfe0003]
ATGAGCCTGATTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATCTAATAGGCAAAGACGCCCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCCCACGCCTTTTTCTATGGCCCTCCTGGCGTGGGAAAAACAAGCCTGG
CTCAAATCATCGCCCGCATGCTAGAACGCCCCATTCTTTTATTCAATGCGACGGATTTCAAGTTAGAGGATTTACGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCGGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCCAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAACAAGAGCGATTTAGACAAACTTTGTGCTAAA
GCTTTAACATTACTCAAAAAACAAATAGAGCCTAGCGCTAAAACCTATCTTTTAAACAACAGTGCTGGCGATGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAGATCCTATCACTTTAGAAACGCTGCAATCCTTACGGCCTCATA
GCCCAAATGACGGATCTTATAGTGATGATACGCATTATAATCTTACTAGCGCTTTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTATTATCTGGCGCGCTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGGCTGGTGAT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTTAATTTAGCCACTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGTTCGCCCAAGTCTAACACGGCCTAT
AGAGCGATCAATCAGGCTTTGGATTATATTCAAAAAGGCTCACTCTACCCCATTCCTAAACACCTACTGCCTAACGCCAA
AGATTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAAATAAGAAATTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)

AAA C-terminal domain (AAA_assoc_2)

(168-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

37.136

100

0.391