Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   MPF82_RS04945 Genome accession   NZ_CP094170
Coordinates   1048046..1049221 (+) Length   391 a.a.
NCBI ID   WP_245089052.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe0004     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1043046..1054221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF82_RS04920 (MPF82_04920) - 1043303..1044199 (+) 897 WP_000697547.1 OriC activity response regulator -
  MPF82_RS04925 (MPF82_04925) - 1044425..1045291 (+) 867 WP_245090898.1 5'-3' exonuclease -
  MPF82_RS04930 (MPF82_04930) - 1045384..1046634 (-) 1251 WP_245089048.1 outer membrane family protein -
  MPF82_RS04935 (MPF82_04935) - 1046802..1047668 (+) 867 WP_245089050.1 DnaJ C-terminal domain-containing protein -
  MPF82_RS04940 (MPF82_04940) - 1047678..1048049 (+) 372 WP_154488947.1 helix-turn-helix transcriptional regulator -
  MPF82_RS04945 (MPF82_04945) rarA 1048046..1049221 (+) 1176 WP_245089052.1 replication-associated recombination protein A Machinery gene
  MPF82_RS04950 (MPF82_04950) fur 1049377..1049826 (+) 450 WP_000824991.1 ferric iron uptake transcriptional regulator -
  MPF82_RS04955 (MPF82_04955) - 1049834..1050331 (-) 498 WP_180591354.1 DUF2147 domain-containing protein -
  MPF82_RS04960 (MPF82_04960) - 1050328..1050865 (-) 538 Protein_968 YhcH/YjgK/YiaL family protein -
  MPF82_RS04965 (MPF82_04965) fliY 1050894..1051757 (-) 864 WP_245089056.1 flagellar motor switch protein FliY -
  MPF82_RS04970 (MPF82_04970) fliM 1051761..1052825 (-) 1065 WP_000763605.1 flagellar motor switch protein FliM -
  MPF82_RS04975 (MPF82_04975) - 1052818..1053594 (-) 777 WP_000602376.1 RNA polymerase sigma factor FliA -
  MPF82_RS04980 (MPF82_04980) - 1053572..1053886 (-) 315 WP_180432804.1 hypothetical protein -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43801.47 Da        Isoelectric Point: 7.4521

>NTDB_id=576907 MPF82_RS04945 WP_245089052.1 1048046..1049221(+) (rarA) [Helicobacter pylori strain Hpfe0004]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIACMLECPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLKKSDLDKLCAK
ALTLLKKQIEPSAKTYLLNNSAGDARALLNLLDLSAKIEDPITLETLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDYIQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=576907 MPF82_RS04945 WP_245089052.1 1048046..1049221(+) (rarA) [Helicobacter pylori strain Hpfe0004]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATTTAATAGGGAAAGACGCCCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCCCATGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTAG
CTCAAATCATCGCCTGCATGCTAGAGTGCCCCATTCTTTTATTCAATGCGACGGATTTCAAATTAGAGGATTTACGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCGGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCTTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAAAAAGAGCGATTTAGACAAGCTTTGCGCTAAA
GCTTTAACATTACTCAAAAAACAAATAGAGCCTAGCGCTAAAACCTATCTTTTAAACAACAGTGCTGGCGATGCCAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAGATAGAAGATCCTATCACTTTAGAAACGCTGCAATCCTTACGGCCTCATA
GCCTAAATGATGGATCTTATAGCGATGATACGCATTATAATCTTACTAGCGCTTTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTATTATCTAGCACGCTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGGTTGGTAAT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTAAATTTAGCCGCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGTTCGCCCAAGTCCAACACGGCTTAT
AGAGCGATCAACCAGGCTTTGGATTATATTCAAAAAGGCTCACTCTACCCTATTCCTAAACACCTGCTGCCTAACGCTAA
AGACTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(168-237)

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

37.136

100

0.391