Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   MPG70_RS04920 Genome accession   NZ_CP094168
Coordinates   1041349..1042524 (+) Length   391 a.a.
NCBI ID   WP_245061698.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe0006     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1036349..1047524
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG70_RS04895 (MPG70_04895) - 1036677..1037573 (+) 897 WP_000697547.1 OriC activity response regulator -
  MPG70_RS04900 (MPG70_04900) - 1037799..1038665 (+) 867 WP_080127562.1 5'-3' exonuclease -
  MPG70_RS04905 (MPG70_04905) - 1038687..1039937 (-) 1251 WP_245061696.1 outer membrane family protein -
  MPG70_RS04910 (MPG70_04910) - 1040105..1040971 (+) 867 WP_219032047.1 DnaJ C-terminal domain-containing protein -
  MPG70_RS04915 (MPG70_04915) - 1040981..1041352 (+) 372 WP_000332994.1 helix-turn-helix transcriptional regulator -
  MPG70_RS04920 (MPG70_04920) rarA 1041349..1042524 (+) 1176 WP_245061698.1 replication-associated recombination protein A Machinery gene
  MPG70_RS04925 (MPG70_04925) fur 1042684..1043136 (+) 453 WP_000824992.1 ferric iron uptake transcriptional regulator -
  MPG70_RS04930 (MPG70_04930) - 1043156..1043653 (-) 498 WP_220942173.1 DUF2147 domain-containing protein -
  MPG70_RS04935 (MPG70_04935) - 1043650..1044186 (-) 537 WP_245061700.1 YhcH/YjgK/YiaL family protein -
  MPG70_RS04940 (MPG70_04940) fliY 1044215..1045078 (-) 864 WP_245061702.1 flagellar motor switch protein FliY -
  MPG70_RS04945 (MPG70_04945) fliM 1045082..1046146 (-) 1065 WP_245061712.1 flagellar motor switch protein FliM -
  MPG70_RS04950 (MPG70_04950) - 1046139..1046915 (-) 777 WP_001916890.1 RNA polymerase sigma factor FliA -
  MPG70_RS04955 (MPG70_04955) - 1046893..1047207 (-) 315 WP_000867999.1 hypothetical protein -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43951.50 Da        Isoelectric Point: 7.8113

>NTDB_id=576868 MPG70_RS04920 WP_245061698.1 1041349..1042524(+) (rarA) [Helicobacter pylori strain Hpfe0006]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHTFFYGPPGVGKTSLAQIIARMLERPILLFNATDFRLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDKLCAK
ALTLLKKQIEPSAKTYLLNNSAGDARALLNLLDLSAKIEDPITLETLQSLRPHSPNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVVFASEDIGNANPNALNLATSCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDYIQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=576868 MPG70_RS04920 WP_245061698.1 1041349..1042524(+) (rarA) [Helicobacter pylori strain Hpfe0006]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATTTAATAGGGAAAGACGCCCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCCCATACCTTTTTCTATGGCCCTCCTGGCGTGGGAAAAACAAGCCTGG
CTCAAATCATCGCCCGCATGCTAGAACGCCCCATTCTTTTATTCAATGCGACGGATTTCAGATTAGAGGATTTACGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCGGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAACAAGAGCGATTTAGACAAGCTTTGTGCTAAA
GCTTTAACATTACTCAAAAAACAAATAGAGCCTAGCGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGATGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAGATAGAAGATCCTATCACTTTAGAAACGCTGCAATCCTTACGGCCTCATA
GCCCAAATGACGGATCTTATAGCGATGATACGCATTATAATCTTACTAGTGCACTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTATTATCTGGCGCGCTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGGTTGGTGGT
TTTTGCAAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTAAATTTAGCCACTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGCTCGCCCAAGTCTAACACGGCTTAT
AGAGCGATCAATCAGGCTTTGGATTATATTCAAAAAGGCTCACTCTACCCCATTCCTAAACACCTGCTGCCTAACGCTAA
AGACTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)

AAA C-terminal domain (AAA_assoc_2)

(168-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

37.379

100

0.394