Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   LEUCM_RS06745 Genome accession   NZ_AP017929
Coordinates   1339340..1341103 (+) Length   587 a.a.
NCBI ID   WP_016265229.1    Uniprot ID   -
Organism   Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 strain LT-13     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1334340..1346103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LEUCM_RS06725 (LACBS_01328) rnjA 1334999..1336687 (-) 1689 WP_025015723.1 ribonuclease J1 -
  LEUCM_RS06730 (LACBS_01329) - 1336692..1336904 (-) 213 WP_011374791.1 DNA-directed RNA polymerase subunit epsilon -
  LEUCM_RS06735 (LACBS_01330) - 1337101..1337586 (+) 486 WP_016265231.1 hypothetical protein -
  LEUCM_RS06740 (LACBS_01331) rcrP 1337614..1339353 (+) 1740 WP_016265230.1 ABC transporter ATP-binding protein Regulator
  LEUCM_RS06745 (LACBS_01332) rcrQ 1339340..1341103 (+) 1764 WP_016265229.1 ABC transporter ATP-binding protein Regulator
  LEUCM_RS06750 (LACBS_01333) def 1341152..1341709 (-) 558 WP_011374787.1 peptide deformylase -
  LEUCM_RS06755 (LACBS_01334) - 1342214..1342897 (+) 684 WP_025015724.1 hypothetical protein -
  LEUCM_RS06760 (LACBS_01335) pdhA 1343221..1344330 (+) 1110 WP_016265227.1 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha -
  LEUCM_RS06765 (LACBS_01336) - 1344332..1345309 (+) 978 WP_016265226.1 alpha-ketoacid dehydrogenase subunit beta -

Sequence

Protein


Download         Length: 587 a.a.        Molecular weight: 65070.62 Da        Isoelectric Point: 6.2489

>NTDB_id=57685 LEUCM_RS06745 WP_016265229.1 1339340..1341103(+) (rcrQ) [Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 strain LT-13]
MKNIKVLKRLMRYIGPYKITFWSAITATVISVLANALWPFIMGLAVTEISQNLAQHVAVNFSYITKVIAMILSFALLYQT
MMFLGSFLMTRAVQHAMRDLRRDINLQMNALPVRFFDSQQQGNILSRVTNDVDAITNALQQSLIQVVTSILGIIMAVIMM
LTINLWMALLSLIMIPASLLISKAIIKKSQVYFQGQQNTLGEMNGYVQENYGGFSVLKLYGQEDRAVDEFAAITDRLTEF
GFKAAFISGIMMPLVGLTTNLTYAGMATLGGYYVLHGVITVGNLQAFIQYIWQINQPISQITQLSGVMQAAAAATQRVFE
ILDEPIEPTDQETAELPADVQGKVEFKDVSFSYDPAKPLIRDLSFTANPGDKIAIVGPTGAGKTTMINLLMRFYDVSSGQ
ILIDGVDTRQLSKQTVRSLFGMVLQDAWLYHTTITENIRFGKLDATEYEVVDAAKTANVDHFIHTLPNGYQMAIDEEADN
VSLGQKQLLTIARAVIANPKILILDEATSSVDTRLESLLQKAMEKVMQGRTSFVIAHRLSTIRDANLILVMDHGQIVEKG
THDDLLAANGVYAKLYNSQFAETKLNA

Nucleotide


Download         Length: 1764 bp        

>NTDB_id=57685 LEUCM_RS06745 WP_016265229.1 1339340..1341103(+) (rcrQ) [Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 strain LT-13]
ATGAAGAATATTAAGGTGCTCAAACGCCTGATGCGCTATATTGGGCCTTATAAAATAACGTTCTGGTCAGCAATTACCGC
AACGGTGATTTCCGTTTTAGCGAATGCGTTGTGGCCATTTATCATGGGACTAGCAGTGACTGAAATTAGTCAAAACTTAG
CGCAACACGTCGCCGTTAACTTTAGTTACATTACTAAAGTCATCGCGATGATTCTCAGCTTTGCGTTACTTTATCAAACA
ATGATGTTTTTGGGATCGTTTTTAATGACGCGTGCAGTGCAACACGCAATGCGTGATTTACGGCGGGATATCAATCTACA
GATGAACGCTTTGCCAGTCCGTTTCTTTGATTCACAACAACAAGGTAATATCTTGTCGCGAGTTACCAATGATGTCGATG
CAATCACGAATGCCTTGCAACAGAGTTTAATTCAAGTTGTGACCTCAATTTTGGGAATCATTATGGCGGTTATCATGATG
TTGACGATTAATTTATGGATGGCTTTACTATCTTTAATTATGATTCCGGCCTCACTTTTGATTTCCAAAGCAATCATCAA
AAAGTCACAGGTTTACTTCCAGGGGCAACAAAATACCTTGGGTGAAATGAATGGTTATGTTCAGGAAAACTACGGTGGCT
TCAGTGTCTTGAAGTTGTATGGTCAAGAAGACAGAGCGGTTGATGAATTTGCAGCGATTACCGATCGATTGACTGAATTT
GGCTTCAAAGCGGCCTTTATTTCAGGAATCATGATGCCGTTAGTGGGTCTAACCACTAATCTAACCTATGCTGGGATGGC
AACCTTGGGTGGTTACTATGTCTTGCACGGGGTCATTACGGTTGGTAATTTACAGGCCTTTATTCAATATATTTGGCAGA
TTAATCAACCAATTTCGCAAATTACGCAGTTATCTGGTGTCATGCAAGCGGCTGCCGCTGCGACACAACGGGTTTTTGAA
ATCTTGGATGAACCTATTGAACCCACTGATCAAGAAACAGCTGAATTACCGGCTGACGTTCAGGGAAAAGTTGAATTTAA
AGATGTCAGCTTTAGCTATGATCCAGCCAAACCATTGATTCGGGATCTAAGTTTCACCGCCAATCCGGGTGATAAAATTG
CGATTGTTGGGCCAACCGGTGCTGGGAAGACGACCATGATTAATTTATTGATGCGTTTTTACGATGTTAGTTCTGGTCAA
ATCCTAATTGATGGCGTCGATACACGCCAGTTGAGTAAACAAACAGTTCGCTCACTCTTTGGGATGGTTCTTCAGGATGC
TTGGTTGTATCACACAACGATTACGGAAAATATTCGCTTTGGGAAGCTAGATGCTACCGAATATGAAGTCGTGGATGCTG
CCAAAACGGCCAATGTTGATCACTTCATCCATACGTTGCCAAATGGTTATCAGATGGCAATTGATGAAGAAGCGGATAAC
GTGTCGTTAGGGCAAAAGCAACTCCTAACAATTGCCCGGGCGGTCATTGCTAACCCTAAAATTTTGATTTTAGATGAAGC
AACCAGTTCGGTCGATACGCGCTTAGAAAGCTTATTGCAAAAGGCGATGGAAAAAGTGATGCAGGGTCGAACCAGTTTTG
TGATTGCCCATCGCTTATCAACAATTCGGGATGCTAACTTAATTTTAGTAATGGATCACGGTCAAATTGTTGAAAAGGGA
ACACATGACGACTTATTAGCTGCTAATGGTGTTTACGCTAAGCTTTATAACAGTCAATTTGCAGAAACAAAATTAAATGC
ATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(361-509)

ABC transporter transmembrane region (ABC_membrane)

(24-297)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

42.906

99.659

0.428

Multiple sequence alignment