Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   MPG42_RS07025 Genome accession   NZ_CP094167
Coordinates   1465728..1466009 (-) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   B5Z6D6
Organism   Helicobacter pylori strain Hpfe0007     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1460728..1471009
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG42_RS07005 (MPG42_07005) - 1461439..1462779 (-) 1341 WP_245013455.1 hypothetical protein -
  MPG42_RS07015 (MPG42_07015) comB4 1463100..1465463 (-) 2364 WP_245028372.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPG42_RS07020 (MPG42_07020) comB3 1465465..1465728 (-) 264 WP_048944994.1 hypothetical protein Machinery gene
  MPG42_RS07025 (MPG42_07025) comB2 1465728..1466009 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  MPG42_RS07030 (MPG42_07030) - 1466154..1466981 (-) 828 WP_245013457.1 DUF5718 family protein -
  MPG42_RS07035 (MPG42_07035) - 1467072..1468124 (-) 1053 WP_245028374.1 MnmA/TRMU family protein -
  MPG42_RS07040 (MPG42_07040) dnaG 1468121..1469800 (-) 1680 WP_245028376.1 DNA primase -
  MPG42_RS07045 (MPG42_07045) groES 1470087..1470443 (+) 357 WP_000671953.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=576845 MPG42_RS07025 WP_001272686.1 1465728..1466009(-) (comB2) [Helicobacter pylori strain Hpfe0007]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=576845 MPG42_RS07025 WP_001272686.1 1465728..1466009(-) (comB2) [Helicobacter pylori strain Hpfe0007]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTCATGGGAATTTTTTAA

Domains

Predicted by InterProScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B5Z6D6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989