Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   KNV97_RS19710 Genome accession   NZ_CP076643
Coordinates   2944553..2945254 (-) Length   233 a.a.
NCBI ID   WP_136485439.1    Uniprot ID   -
Organism   Vibrio ostreae strain OG9-811     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2939553..2950254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KNV97_RS19680 (KNV97_19680) gspL 2939763..2940974 (+) 1212 WP_218562620.1 type II secretion system protein GspL -
  KNV97_RS19685 (KNV97_19685) - 2940984..2941478 (+) 495 WP_136485449.1 type II secretion system protein M -
  KNV97_RS19690 (KNV97_19690) - 2941478..2942236 (+) 759 WP_218562621.1 type II secretion system protein N -
  KNV97_RS19695 (KNV97_19695) cysQ 2942322..2943149 (-) 828 WP_136485445.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  KNV97_RS19700 (KNV97_19700) nudE 2943173..2943721 (-) 549 WP_136485443.1 ADP compounds hydrolase NudE -
  KNV97_RS19705 (KNV97_19705) nfuA 2943867..2944454 (-) 588 WP_136485441.1 Fe-S biogenesis protein NfuA -
  KNV97_RS19710 (KNV97_19710) comF 2944553..2945254 (-) 702 WP_136485439.1 phosphoribosyltransferase family protein Machinery gene
  KNV97_RS19715 (KNV97_19715) bioH 2945342..2946112 (+) 771 WP_136485517.1 pimeloyl-ACP methyl ester esterase BioH -
  KNV97_RS19720 (KNV97_19720) - 2946242..2946712 (+) 471 WP_136485437.1 ATP-dependent Lon protease -
  KNV97_RS19725 (KNV97_19725) - 2946793..2949099 (-) 2307 WP_218562622.1 Tex family protein -
  KNV97_RS19730 (KNV97_19730) - 2949155..2949817 (-) 663 WP_136485432.1 hypothetical protein -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26485.00 Da        Isoelectric Point: 9.4416

>NTDB_id=576833 KNV97_RS19710 WP_136485439.1 2944553..2945254(-) (comF) [Vibrio ostreae strain OG9-811]
MLANQLQKTMLSWLAPACPLCRLPLAKQDTHGLCAACLEWYTPQPRCERCGLPSPMPVTQCGECLRSPPPWQRLICLGDY
RFPLSQAVHKLKYQRQFWQAPSLAGLLATRITDPAPLLTSVPLHWRRYWLRGFNQSDLLARALSQALQCHYQPQLLQRVR
ATAMQQGLNKRERTRNLTQAFRLSEPPASRHIAIVDDVVTTGSTMRQLCNLLLDVGVKRLDIYCICRTPEPGS

Nucleotide


Download         Length: 702 bp        

>NTDB_id=576833 KNV97_RS19710 WP_136485439.1 2944553..2945254(-) (comF) [Vibrio ostreae strain OG9-811]
ATGTTAGCGAATCAGCTTCAAAAAACCATGCTTTCCTGGCTGGCTCCGGCCTGCCCGCTGTGCCGCCTGCCGCTGGCCAA
GCAGGATACGCACGGCTTATGCGCCGCCTGCCTCGAGTGGTATACGCCGCAACCGCGATGCGAGCGCTGCGGACTGCCAA
GCCCGATGCCGGTCACACAATGCGGTGAATGCCTGCGCTCGCCACCGCCCTGGCAACGCCTGATTTGTCTCGGGGATTAC
CGTTTTCCACTCAGTCAGGCGGTGCATAAACTCAAGTATCAGCGTCAGTTCTGGCAGGCACCGTCACTGGCCGGTTTACT
GGCAACACGCATCACGGATCCGGCTCCGCTTCTCACTTCAGTGCCCCTGCACTGGCGCCGTTACTGGCTGCGTGGTTTCA
ATCAGAGTGATCTGCTGGCGCGGGCGCTGAGTCAAGCACTGCAGTGTCATTACCAGCCGCAGCTGTTGCAACGGGTACGT
GCCACCGCCATGCAGCAGGGACTGAATAAACGCGAACGCACCCGTAACCTGACTCAGGCATTCCGCCTCAGTGAACCACC
AGCCAGTCGCCATATTGCTATCGTCGACGATGTGGTCACCACAGGCAGTACCATGCGGCAATTATGCAATTTACTGCTTG
ATGTGGGGGTCAAAAGGCTTGATATTTACTGTATATGCCGTACTCCTGAGCCGGGAAGCTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

64.069

99.142

0.635
  comF Vibrio campbellii strain DS40M4

49.583

100

0.511