Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   MPG42_RS04970 Genome accession   NZ_CP094167
Coordinates   1047689..1048864 (+) Length   391 a.a.
NCBI ID   WP_245028102.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe0007     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1042689..1053864
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG42_RS04945 (MPG42_04945) - 1042977..1043873 (+) 897 WP_096532409.1 OriC activity response regulator -
  MPG42_RS04950 (MPG42_04950) - 1044127..1044963 (+) 837 WP_245028098.1 5'-3' exonuclease -
  MPG42_RS04955 (MPG42_04955) - 1045027..1046277 (-) 1251 WP_245028100.1 outer membrane family protein -
  MPG42_RS04960 (MPG42_04960) - 1046445..1047311 (+) 867 WP_000045798.1 DnaJ family protein -
  MPG42_RS04965 (MPG42_04965) - 1047321..1047692 (+) 372 WP_000332994.1 helix-turn-helix transcriptional regulator -
  MPG42_RS04970 (MPG42_04970) rarA 1047689..1048864 (+) 1176 WP_245028102.1 replication-associated recombination protein A Machinery gene
  MPG42_RS04975 (MPG42_04975) fur 1049024..1049476 (+) 453 WP_000824992.1 ferric iron uptake transcriptional regulator -
  MPG42_RS04980 (MPG42_04980) - 1049496..1049993 (-) 498 WP_245028104.1 DUF2147 domain-containing protein -
  MPG42_RS04985 (MPG42_04985) - 1049990..1050526 (-) 537 WP_245013778.1 YhcH/YjgK/YiaL family protein -
  MPG42_RS04990 (MPG42_04990) fliY 1050554..1051417 (-) 864 WP_245028106.1 flagellar motor switch protein FliY -
  MPG42_RS04995 (MPG42_04995) fliM 1051421..1052485 (-) 1065 WP_180598867.1 flagellar motor switch protein FliM -
  MPG42_RS05000 (MPG42_05000) - 1052478..1053254 (-) 777 WP_187842353.1 RNA polymerase sigma factor FliA -
  MPG42_RS05005 (MPG42_05005) - 1053232..1053546 (-) 315 WP_000867999.1 hypothetical protein -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43906.51 Da        Isoelectric Point: 7.7629

>NTDB_id=576829 MPG42_RS04970 WP_245028102.1 1047689..1048864(+) (rarA) [Helicobacter pylori strain Hpfe0007]
MNLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDKLCTK
ALTLLKKQIEPSAKTYLLNNSAGDARALLNLLDLSTKIEDPITLETLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVVFASEDIGNANPNALNLAASCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDCIQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=576829 MPG42_RS04970 WP_245028102.1 1047689..1048864(+) (rarA) [Helicobacter pylori strain Hpfe0007]
ATGAACCTGACTTCACTTTTAAATCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATTTAATAGGCAAAGACGCCCC
CTTATTTAAAGCCTTACAATCCAAACACTTCCCCCATGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATCGCCCGCATGCTAGAACGCCCCATTCTTTTATTCAATGCGACGGATTTCAAATTAGAGGATTTACGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCCGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAACAAGAGCGATTTAGACAAGCTTTGCACTAAA
GCTTTAACATTGCTCAAAAAACAAATAGAGCCTAGCGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGATGCCAGAGC
GTTATTAAACCTTTTAGATTTGAGCACCAAAATAGAAGATCCTATCACTTTAGAAACGCTGCAATCCTTACGGCCTCATA
GCCTAAATGATGGATCTTATAGCGATGATACGCATTATAACCTTACTAGCGCTCTAATCAAGTCTTTAAGGGGGAGCGAT
GAAAACGCTTCCATCTATTATCTGGCGCGCTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGGCTGGTGGT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTAAATTTAGCCGCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGTTCGCCCAAGTCTAACACGGCTTAT
AGAGCGATCAACCAGGCTTTGGATTGTATTCAAAAAGGCTCACTCTACCCCATTCCTAAACACCTACTGCCTAACGCTAA
AGACTACCTTTACCCGCATGATTATAACGGATATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAAATAAGAAATTGA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)

AAA C-terminal domain (AAA_assoc_2)

(168-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

37.136

100

0.391