Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   LEUCM_RS06425 Genome accession   NZ_AP017929
Coordinates   1280404..1282281 (+) Length   625 a.a.
NCBI ID   WP_025016449.1    Uniprot ID   -
Organism   Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 strain LT-13     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1275404..1287281
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LEUCM_RS06395 (LACBS_01259) - 1275479..1275799 (-) 321 WP_016265278.1 hypothetical protein -
  LEUCM_RS06400 (LACBS_01260) - 1275820..1276476 (-) 657 WP_016265277.1 type II CAAX endopeptidase family protein -
  LEUCM_RS06405 (LACBS_01261) - 1276678..1276878 (+) 201 WP_004270328.1 cold-shock protein -
  LEUCM_RS06410 (LACBS_01262) - 1277076..1277804 (-) 729 WP_016265276.1 ion transporter -
  LEUCM_RS06415 (LACBS_01263) - 1278009..1278650 (+) 642 WP_016265275.1 TetR family transcriptional regulator -
  LEUCM_RS06420 (LACBS_01264) rcrP 1278674..1280404 (+) 1731 WP_011374848.1 ABC transporter ATP-binding protein Regulator
  LEUCM_RS06425 (LACBS_01265) rcrQ 1280404..1282281 (+) 1878 WP_025016449.1 ABC transporter ATP-binding protein Regulator
  LEUCM_RS06430 (LACBS_01266) - 1282379..1283389 (+) 1011 WP_016265274.1 serine hydrolase -
  LEUCM_RS06435 (LACBS_01267) manA 1283491..1284465 (+) 975 WP_016265273.1 mannose-6-phosphate isomerase, class I -
  LEUCM_RS06440 (LACBS_01268) - 1284539..1285183 (+) 645 WP_016265272.1 HD domain-containing protein -
  LEUCM_RS06445 (LACBS_01269) - 1285233..1285478 (-) 246 WP_016265271.1 hypothetical protein -
  LEUCM_RS06450 (LACBS_01270) - 1285600..1286397 (-) 798 WP_016265270.1 pyruvate, water dikinase regulatory protein -
  LEUCM_RS06455 (LACBS_01271) - 1286417..1287040 (-) 624 WP_016265269.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 625 a.a.        Molecular weight: 69642.99 Da        Isoelectric Point: 5.2493

>NTDB_id=57682 LEUCM_RS06425 WP_025016449.1 1280404..1282281(+) (rcrQ) [Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 strain LT-13]
MAEKAATNRPQGGHGPGRGMGGVVEKPKNFWGTTNRLLKYMSSRLIALVFVIVLAIVSVIFQIRTPKVLGEATTEIFKGV
MKGNAMQKAGIAMDRLPIDFDKIQHIIMTVILMYLASAVFSFLQQFIMTRISQQTVYELRKELKDKMQRVPINYYDTHSN
GDIMSRAINDMDNIASTLQQSLTQMVTSTVTFIGVLWMMLTISWQLTLIALVTIPLSLIVVGIVAPKSQKFFAAQQKSLG
LLNNQIEENFSGQVVLKTFNREQVTIDTFEEQNEKLYKAAWKAQFISGVIMPLMTFVNNLGYVFVAIIGGIRVSHGQVTL
GDMQAFMQYTQQFSQPISQLANLANTIQSTIASAERVFAVLDEEDMSEEPSTVPVVQDDANQLEMEHVEFGYQGKDLLLT
DYNLQVKPGQMIAIVGPTGAGKTTIINLLERFYDVSGGSIKLKGVDTRDMSREELRSHFAMVLQDTWLFTGTIWDNLKYG
NESASDEAILAAAKAAHVDGFVRQLPEGYNTVLNEEASNISQGQRQLLTIARAFVADPDILILDEATSSVDTRTEIHIQH
AMERLLQNRTSFVVAHRLSTIRDADNIIVMNHGSIMETGTHDESMVQDGFYADLYNSQFSGNVEI

Nucleotide


Download         Length: 1878 bp        

>NTDB_id=57682 LEUCM_RS06425 WP_025016449.1 1280404..1282281(+) (rcrQ) [Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 strain LT-13]
ATGGCAGAAAAAGCAGCAACAAACCGGCCACAAGGTGGTCACGGTCCAGGTCGCGGCATGGGTGGCGTCGTTGAAAAGCC
TAAGAATTTCTGGGGCACAACTAATCGTTTATTGAAATACATGTCGAGCCGTTTAATTGCCTTAGTATTTGTCATTGTTT
TGGCGATTGTCTCCGTTATTTTCCAGATTAGAACGCCCAAAGTTTTAGGGGAAGCAACAACTGAAATCTTTAAAGGGGTG
ATGAAAGGCAATGCCATGCAAAAAGCTGGGATTGCAATGGATCGCTTACCAATTGATTTCGATAAGATTCAACACATTAT
CATGACGGTGATCTTGATGTATCTTGCTTCAGCCGTCTTCAGTTTCTTACAACAATTTATTATGACGCGGATTTCACAAC
AAACCGTCTATGAATTGCGTAAGGAATTGAAAGATAAGATGCAACGAGTGCCAATCAATTATTACGATACCCATTCAAAC
GGGGATATCATGAGTCGTGCGATTAATGATATGGATAATATTGCCAGCACGCTACAACAAAGTTTAACGCAAATGGTGAC
CAGCACGGTAACGTTTATCGGTGTTTTATGGATGATGCTGACGATCAGTTGGCAATTAACGCTGATTGCTTTGGTCACAA
TTCCGTTGAGTTTAATTGTCGTTGGGATTGTCGCACCTAAGTCGCAAAAATTCTTTGCTGCACAACAAAAGAGTTTAGGC
TTATTAAATAATCAAATCGAAGAAAACTTTTCCGGTCAAGTGGTCTTGAAGACCTTTAACCGGGAACAAGTGACGATTGA
TACGTTTGAAGAACAAAATGAAAAGTTGTATAAAGCTGCTTGGAAAGCCCAATTTATCTCTGGGGTGATCATGCCATTGA
TGACTTTCGTCAATAACTTAGGGTACGTCTTCGTTGCGATTATCGGTGGGATTCGCGTCTCACACGGTCAAGTCACATTA
GGGGACATGCAGGCTTTCATGCAATATACACAACAATTCTCACAACCAATCTCACAATTGGCTAACTTGGCAAACACAAT
TCAATCAACGATTGCTTCAGCTGAACGGGTTTTTGCTGTTTTAGATGAAGAAGATATGTCTGAAGAACCTTCAACTGTCC
CAGTTGTGCAAGATGATGCCAACCAATTAGAAATGGAACATGTTGAATTTGGTTACCAAGGCAAGGATCTCTTGTTGACG
GACTATAATTTACAAGTTAAACCGGGCCAAATGATCGCGATTGTTGGTCCTACCGGGGCTGGTAAGACAACTATTATTAA
TTTACTTGAACGTTTCTACGATGTTAGTGGCGGTTCGATTAAATTAAAAGGTGTCGATACACGTGATATGAGTCGGGAAG
AATTGCGGAGTCATTTTGCGATGGTTCTTCAAGATACTTGGCTATTCACCGGGACGATTTGGGATAACTTGAAGTACGGT
AATGAATCAGCTTCAGACGAAGCGATTTTGGCAGCTGCTAAAGCAGCCCATGTTGATGGCTTTGTTCGTCAATTACCTGA
AGGTTATAACACAGTCTTGAATGAAGAAGCTTCAAATATTTCACAAGGTCAACGGCAATTATTGACGATTGCCCGGGCCT
TTGTGGCCGATCCAGATATCTTAATCTTGGATGAAGCAACCAGTTCTGTTGATACGCGGACTGAAATTCATATCCAACAC
GCAATGGAACGTCTATTGCAAAATCGAACGAGTTTCGTTGTTGCCCATCGTTTATCAACGATTCGGGATGCGGATAATAT
CATTGTGATGAATCACGGTTCAATTATGGAAACCGGCACACATGATGAATCGATGGTTCAAGACGGCTTTTACGCTGATC
TATATAACAGCCAATTCTCAGGGAACGTCGAGATTTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(399-548)

ABC transporter transmembrane region (ABC_membrane)

(49-336)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

44.291

92.48

0.41

Multiple sequence alignment