Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   MPG18_RS02770 Genome accession   NZ_CP094165
Coordinates   578340..579515 (-) Length   391 a.a.
NCBI ID   WP_245078473.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe0011     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 573340..584515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG18_RS02735 (MPG18_02735) - 573656..573970 (+) 315 WP_000868000.1 hypothetical protein -
  MPG18_RS02740 (MPG18_02740) - 573948..574724 (+) 777 WP_245078466.1 RNA polymerase sigma factor FliA -
  MPG18_RS02745 (MPG18_02745) fliM 574717..575781 (+) 1065 WP_033123133.1 flagellar motor switch protein FliM -
  MPG18_RS02750 (MPG18_02750) fliY 575785..576648 (+) 864 WP_245078468.1 flagellar motor switch protein FliY -
  MPG18_RS02755 (MPG18_02755) - 576678..577214 (+) 537 WP_245078469.1 YhcH/YjgK/YiaL family protein -
  MPG18_RS02760 (MPG18_02760) - 577211..577708 (+) 498 WP_245078471.1 DUF2147 domain-containing protein -
  MPG18_RS02765 (MPG18_02765) fur 577728..578180 (-) 453 WP_000825002.1 ferric iron uptake transcriptional regulator -
  MPG18_RS02770 (MPG18_02770) rarA 578340..579515 (-) 1176 WP_245078473.1 replication-associated recombination protein A Machinery gene
  MPG18_RS02775 (MPG18_02775) - 579512..579883 (-) 372 WP_000332994.1 helix-turn-helix transcriptional regulator -
  MPG18_RS02780 (MPG18_02780) - 579893..580759 (-) 867 WP_245078475.1 DnaJ C-terminal domain-containing protein -
  MPG18_RS02785 (MPG18_02785) - 580927..582177 (+) 1251 WP_245078476.1 outer membrane family protein -
  MPG18_RS02790 (MPG18_02790) - 582240..583106 (-) 867 WP_245078684.1 5'-3' exonuclease -
  MPG18_RS02795 (MPG18_02795) - 583330..584226 (-) 897 WP_000697547.1 OriC activity response regulator -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43835.42 Da        Isoelectric Point: 8.1225

>NTDB_id=576790 MPG18_RS02770 WP_245078473.1 578340..579515(-) (rarA) [Helicobacter pylori strain Hpfe0011]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDKLCTK
ALTLLKKQIEPSAKTYLLNNSAGDARALLNLLDLSAKIEDPITLETLQSLRPHSPNDGSYSDGTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVVFASEDIGNANPNALNLAASCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDYIQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=576790 MPG18_RS02770 WP_245078473.1 578340..579515(-) (rarA) [Helicobacter pylori strain Hpfe0011]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATCTAATAGGCAAAGACGCCCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCCCACGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATCGCCCGCATGCTAGAGCGCCCCATTCTTTTATTCAATGCGACGGATTTCAAATTAGAGGATTTACGCCTT
AAACTTAAAAATTACCAAAACACCCTTTTAAAACCGGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTCTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATCTTTGAATTAACCCCCCTAAACAAGAGCGATTTAGACAAGCTTTGCACTAAA
GCTTTAACATTGCTCAAAAAACAAATAGAGCCTAGCGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGATGCCAGAGC
GTTATTAAACCTTTTAGATTTGAGTGCTAAAATAGAAGATCCTATCACTTTAGAAACGCTGCAATCCTTACGGCCTCATA
GCCCAAATGACGGATCTTATAGCGATGGTACGCATTATAATCTTACTAGCGCTTTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTATTATCTAGCGCGCTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGGCTGGTGGT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTAAATTTAGCCGCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGTTCGCCCAAGTCTAACACGGCTTAT
AGAGCGATCAACCAGGCTTTGGATTATATTCAAAAAGGCTCACTCTACCCCATTCCTAAACACCTGCTGCCTAACGCCAA
AGATTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(168-237)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

37.136

100

0.391