Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   MPG84_RS06425 Genome accession   NZ_CP094164
Coordinates   1347884..1348150 (+) Length   88 a.a.
NCBI ID   WP_245022084.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe0012     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1342884..1353150
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG84_RS06390 (MPG84_06390) - 1343917..1344228 (-) 312 WP_342370465.1 DUF1104 domain-containing protein -
  MPG84_RS06395 (MPG84_06395) - 1344164..1344558 (+) 395 Protein_1247 P-type conjugative transfer protein TrbL -
  MPG84_RS06400 (MPG84_06400) - 1344631..1344867 (+) 237 Protein_1248 CAAX protease -
  MPG84_RS06405 (MPG84_06405) - 1344958..1345741 (+) 784 Protein_1249 hypothetical protein -
  MPG84_RS06410 (MPG84_06410) - 1345761..1346054 (+) 294 WP_001160318.1 hypothetical protein -
  MPG84_RS06415 (MPG84_06415) - 1346061..1347584 (+) 1524 WP_245059180.1 toprim domain-containing protein -
  MPG84_RS06420 (MPG84_06420) - 1347581..1347883 (+) 303 WP_342368801.1 virB2 type IV secretion protein -
  MPG84_RS06425 (MPG84_06425) comB3 1347884..1348150 (+) 267 WP_245022084.1 virB3 type IV secretion protein Machinery gene
  MPG84_RS07860 - 1348197..1350568 (+) 2372 Protein_1254 VirB4 family type IV secretion/conjugal transfer ATPase -
  MPG84_RS06450 (MPG84_06450) - 1350571..1352202 (+) 1632 WP_245059185.1 type IA DNA topoisomerase -
  MPG84_RS06455 (MPG84_06455) - 1352165..1352353 (-) 189 Protein_1256 DUF1104 domain-containing protein -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 10164.91 Da        Isoelectric Point: 4.5812

>NTDB_id=576757 MPG84_RS06425 WP_245022084.1 1347884..1348150(+) (comB3) [Helicobacter pylori strain Hpfe0012]
MALHIACVESINIREISKRETFLGLNLDSWVVSFLMSAWLLSFQPLYAMGLMDSCVFVFYILEFFDEDITAILHALFTLR
TGARNYYA

Nucleotide


Download         Length: 267 bp        

>NTDB_id=576757 MPG84_RS06425 WP_245022084.1 1347884..1348150(+) (comB3) [Helicobacter pylori strain Hpfe0012]
ATGGCATTGCATATTGCTTGTGTTGAAAGTATCAACATTAGAGAAATCAGCAAAAGAGAAACTTTTTTGGGATTAAACTT
GGATAGTTGGGTTGTTAGTTTCTTAATGTCGGCATGGTTACTTTCATTCCAACCACTTTATGCTATGGGTTTAATGGATA
GTTGTGTGTTTGTATTCTACATTTTAGAATTTTTTGATGAAGATATAACAGCCATTTTGCATGCGCTTTTCACATTAAGG
ACAGGAGCTAGAAATTATTATGCTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

40.964

94.318

0.386