Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   MPG84_RS04965 Genome accession   NZ_CP094164
Coordinates   1057111..1058286 (+) Length   391 a.a.
NCBI ID   WP_245058908.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe0012     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1052111..1063286
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG84_RS04940 (MPG84_04940) - 1052373..1053269 (+) 897 WP_245058904.1 response regulator -
  MPG84_RS04945 (MPG84_04945) - 1053493..1054359 (+) 867 WP_245060177.1 5'-3' exonuclease -
  MPG84_RS04950 (MPG84_04950) - 1054449..1055699 (-) 1251 WP_245058906.1 outer membrane family protein -
  MPG84_RS04955 (MPG84_04955) - 1055867..1056733 (+) 867 WP_000045783.1 DnaJ family protein -
  MPG84_RS04960 (MPG84_04960) - 1056743..1057114 (+) 372 WP_245058907.1 helix-turn-helix transcriptional regulator -
  MPG84_RS04965 (MPG84_04965) rarA 1057111..1058286 (+) 1176 WP_245058908.1 replication-associated recombination protein A Machinery gene
  MPG84_RS04970 (MPG84_04970) fur 1058447..1058899 (+) 453 WP_124733351.1 ferric iron uptake transcriptional regulator -
  MPG84_RS04975 (MPG84_04975) - 1058919..1059416 (-) 498 WP_180649950.1 DUF2147 domain-containing protein -
  MPG84_RS04980 (MPG84_04980) - 1059413..1059949 (-) 537 WP_245058909.1 YhcH/YjgK/YiaL family protein -
  MPG84_RS04985 (MPG84_04985) fliY 1059977..1060840 (-) 864 WP_245058911.1 flagellar motor switch protein FliY -
  MPG84_RS04990 (MPG84_04990) fliM 1060844..1061908 (-) 1065 WP_245058914.1 flagellar motor switch protein FliM -
  MPG84_RS04995 (MPG84_04995) - 1061901..1062677 (-) 777 WP_017280212.1 RNA polymerase sigma factor FliA -
  MPG84_RS05000 (MPG84_05000) - 1062655..1062969 (-) 315 WP_140581894.1 hypothetical protein -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43860.58 Da        Isoelectric Point: 8.3007

>NTDB_id=576746 MPG84_RS04965 WP_245058908.1 1057111..1058286(+) (rarA) [Helicobacter pylori strain Hpfe0012]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDKLCAK
ALTLLKKQIEPSAKTYLLNNSAGDARALLNLLDLSAKIEDPITLKTLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVVFASEDIGNTNPNALNLAASCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDCVQKGLLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=576746 MPG84_RS04965 WP_245058908.1 1057111..1058286(+) (rarA) [Helicobacter pylori strain Hpfe0012]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATCTAATAGGCAAAGACGCCCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCCCACGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATCGCCCGCATGCTAGAGCGCCCCATTCTTTTATTTAATGCGACAGATTTCAAATTAGAGGATTTGCGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCCGTTGTTTTTATTGATGAAACCCACAGATTAAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCCAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAACAAGAGCGATTTAGACAAACTTTGCGCTAAA
GCTTTAACATTACTCAAAAAACAAATAGAGCCTAGCGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGATGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGTGCTAAAATAGAAGATCCTATCACTTTAAAAACGCTGCAATCCTTACGGCCTCATA
GCCTAAATGACGGATCTTATAGCGATGATACGCATTATAATCTTACTAGCGCATTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTACTATCTAGCGCGCTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGGTTGGTGGT
TTTTGCGAGCGAAGATATTGGTAACACTAACCCAAACGCTCTAAATTTAGCCGCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGTTCGCCCAAGTCTAACACGGCTTAT
AGAGCGATCAACCAGGCTTTGGATTGCGTTCAAAAAGGCTTACTCTACCCCATTCCTAAACACCTGCTACCTAACGCTAA
AGATTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)

AAA C-terminal domain (AAA_assoc_2)

(168-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

36.65

100

0.386