Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   MPG04_RS04970 Genome accession   NZ_CP094161
Coordinates   1044311..1045486 (+) Length   391 a.a.
NCBI ID   WP_245043777.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe0015     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1039311..1050486
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG04_RS04945 (MPG04_04945) - 1039645..1040541 (+) 897 WP_000697547.1 OriC activity response regulator -
  MPG04_RS04950 (MPG04_04950) - 1040945..1041627 (+) 683 Protein_959 5'-3' exonuclease -
  MPG04_RS04955 (MPG04_04955) - 1041649..1042899 (-) 1251 WP_245043773.1 outer membrane family protein -
  MPG04_RS04960 (MPG04_04960) - 1043067..1043933 (+) 867 WP_245043775.1 DnaJ C-terminal domain-containing protein -
  MPG04_RS04965 (MPG04_04965) - 1043943..1044314 (+) 372 WP_000332994.1 helix-turn-helix transcriptional regulator -
  MPG04_RS04970 (MPG04_04970) rarA 1044311..1045486 (+) 1176 WP_245043777.1 replication-associated recombination protein A Machinery gene
  MPG04_RS04975 (MPG04_04975) fur 1045646..1046098 (+) 453 WP_000824985.1 ferric iron uptake transcriptional regulator -
  MPG04_RS04980 (MPG04_04980) - 1046118..1046615 (-) 498 WP_000780273.1 DUF2147 domain-containing protein -
  MPG04_RS04985 (MPG04_04985) - 1046612..1047148 (-) 537 WP_245043779.1 YhcH/YjgK/YiaL family protein -
  MPG04_RS04990 (MPG04_04990) fliY 1047176..1048039 (-) 864 WP_245043781.1 flagellar motor switch protein FliY -
  MPG04_RS04995 (MPG04_04995) fliM 1048043..1049107 (-) 1065 WP_245043783.1 flagellar motor switch protein FliM -
  MPG04_RS05000 (MPG04_05000) - 1049100..1049876 (-) 777 WP_212790044.1 RNA polymerase sigma factor FliA -
  MPG04_RS05005 (MPG04_05005) - 1049854..1050168 (-) 315 WP_000867999.1 hypothetical protein -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43946.65 Da        Isoelectric Point: 8.3996

>NTDB_id=576708 MPG04_RS04970 WP_245043777.1 1044311..1045486(+) (rarA) [Helicobacter pylori strain Hpfe0015]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKVLQSKHFPHAFFYGPPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLKKSDLDKLCAK
ALTLLKKQIEPSAKTYLLNNSAGDARALLNLLDLSAKIENPITLETLQSLRPHSPNDGSYSDDTHYNLISALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVVFASEDIGNANPNALNLATSCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDYIQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=576708 MPG04_RS04970 WP_245043777.1 1044311..1045486(+) (rarA) [Helicobacter pylori strain Hpfe0015]
ATGAGTCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATCTAATAGGGAAAGACGCCCC
CTTATTTAAAGTCCTACAATCCAAACACTTCCCCCATGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATCGCCCGCATGCTAGAGCGCCCCATTCTTTTATTCAATGCGACGGATTTCAAATTAGAGGATTTACGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCGGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCCAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAAAAAAAGCGATTTAGACAAGCTTTGCGCTAAA
GCTTTAACATTGCTCAAAAAACAAATAGAGCCTAGCGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGATGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGTGCTAAAATAGAAAATCCTATCACTTTAGAAACGCTGCAATCCTTACGGCCTCATA
GCCCAAATGACGGATCTTATAGCGATGATACGCATTATAATCTTATTAGTGCACTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTATTATCTGGCGCGCTTGATTGCTGGTGGGGAAAACCCGGAATTTATCGCTAGAAGGCTGGTGGT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTAAATTTAGCTACTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGTTCGCCCAAGTCTAACACGGCTTAT
AGAGCGATCAACCAGGCTTTGGATTATATTCAAAAAGGCTCACTCTACCCCATTCCTAAACACCTGCTACCTAACGCTAA
AGACTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)

AAA C-terminal domain (AAA_assoc_2)

(168-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

37.379

100

0.394