Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   MPG67_RS05155 Genome accession   NZ_CP094156
Coordinates   1084085..1085260 (+) Length   391 a.a.
NCBI ID   WP_245072534.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe005     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1079085..1090260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG67_RS05130 (MPG67_05130) - 1079413..1080309 (+) 897 WP_245050172.1 response regulator -
  MPG67_RS05135 (MPG67_05135) - 1080535..1081401 (+) 867 WP_245073352.1 5'-3' exonuclease -
  MPG67_RS05140 (MPG67_05140) - 1081423..1082673 (-) 1251 WP_245050173.1 outer membrane family protein -
  MPG67_RS05145 (MPG67_05145) - 1082841..1083707 (+) 867 WP_245072532.1 DnaJ C-terminal domain-containing protein -
  MPG67_RS05150 (MPG67_05150) - 1083717..1084088 (+) 372 WP_039704360.1 helix-turn-helix transcriptional regulator -
  MPG67_RS05155 (MPG67_05155) rarA 1084085..1085260 (+) 1176 WP_245072534.1 replication-associated recombination protein A Machinery gene
  MPG67_RS05160 (MPG67_05160) fur 1085420..1085872 (+) 453 WP_000824985.1 ferric iron uptake transcriptional regulator -
  MPG67_RS05165 (MPG67_05165) - 1085892..1086389 (-) 498 WP_024116576.1 DUF2147 domain-containing protein -
  MPG67_RS05170 (MPG67_05170) - 1086386..1086922 (-) 537 WP_245072535.1 YhcH/YjgK/YiaL family protein -
  MPG67_RS05175 (MPG67_05175) fliY 1086951..1087814 (-) 864 WP_245072536.1 flagellar motor switch protein FliY -
  MPG67_RS05180 (MPG67_05180) fliM 1087818..1088882 (-) 1065 WP_000763605.1 flagellar motor switch protein FliM -
  MPG67_RS05185 (MPG67_05185) - 1088875..1089651 (-) 777 WP_245072537.1 RNA polymerase sigma factor FliA -
  MPG67_RS05190 (MPG67_05190) - 1089629..1089943 (-) 315 WP_000868000.1 hypothetical protein -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43919.58 Da        Isoelectric Point: 7.8110

>NTDB_id=576548 MPG67_RS05155 WP_245072534.1 1084085..1085260(+) (rarA) [Helicobacter pylori strain Hpfe005]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDKLCAK
ALTLLKKQIEPGAKTYLLNNSAGDARALLNLLDLSAKIEDPITLETLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLVRLIAGGENPEFIARRLVVFASEDIGNANPNALNLASSCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDYIQKGLLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=576548 MPG67_RS05155 WP_245072534.1 1084085..1085260(+) (rarA) [Helicobacter pylori strain Hpfe005]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATTTAATAGGGAAAGACGCCCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCCCACGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCTTGG
CTCAAATCATCGCCCGCATGCTAGAGCGCCCCATTCTTTTATTTAATGCGACGGATTTCAAATTAGAGGATTTACGCCTT
AAACTTAAAAATTACCAAAACACCCTTTTAAAACCGGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCCAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAACAAGAGCGATTTAGACAAACTTTGTGCTAAA
GCTTTAACATTACTCAAAAAACAAATAGAGCCTGGCGCTAAAACCTACCTTTTGAACAACAGCGCTGGCGATGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAGATAGAAGATCCTATCACTTTAGAAACGCTGCAATCCTTACGGCCTCATA
GCCTGAATGACGGATCTTATAGCGATGATACGCATTATAATCTTACTAGCGCTTTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTATTATCTGGTGCGCTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCTAGAAGGCTGGTGGT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTAAATTTAGCCTCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGTTCGCCCAAGTCTAACACGGCCTAT
AGAGCGATCAATCAGGCTTTGGATTATATTCAAAAAGGCTTACTCTACCCCATTCCTAAACACCTGCTGCCTAACGCTAA
AGACTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)

AAA C-terminal domain (AAA_assoc_2)

(168-237)

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

37.136

100

0.391