Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   MPG67_RS02505 Genome accession   NZ_CP094156
Coordinates   504465..504749 (-) Length   94 a.a.
NCBI ID   WP_000736478.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe005     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 499465..509749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG67_RS02480 (MPG67_02480) - 500069..501238 (-) 1170 WP_245073094.1 VirB8/TrbF family protein -
  MPG67_RS02485 (MPG67_02485) - 501231..501365 (-) 135 WP_000738749.1 hypothetical protein -
  MPG67_RS02490 (MPG67_02490) comB4 501362..503944 (-) 2583 WP_245073096.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPG67_RS02495 (MPG67_02495) - 503944..504180 (-) 237 WP_245073098.1 hypothetical protein -
  MPG67_RS02500 (MPG67_02500) comB3 504191..504454 (-) 264 WP_001177712.1 hypothetical protein Machinery gene
  MPG67_RS02505 (MPG67_02505) comB2 504465..504749 (-) 285 WP_000736478.1 TrbC/VirB2 family protein Machinery gene
  MPG67_RS02510 (MPG67_02510) - 504746..505225 (-) 480 WP_000571125.1 hypothetical protein -
  MPG67_RS02515 (MPG67_02515) - 505329..506117 (-) 789 WP_245073100.1 integrase -
  MPG67_RS02525 (MPG67_02525) - 506171..506894 (-) 724 Protein_487 hypothetical protein -
  MPG67_RS02530 (MPG67_02530) - 506938..507927 (-) 990 WP_245051149.1 hypothetical protein -
  MPG67_RS02535 (MPG67_02535) - 507983..509709 (-) 1727 Protein_489 DUF262 domain-containing protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10683.00 Da        Isoelectric Point: 10.9123

>NTDB_id=576536 MPG67_RS02505 WP_000736478.1 504465..504749(-) (comB2) [Helicobacter pylori strain Hpfe005]
MKKLSHFRKLIAFLGFSPLLLQADMTTFFNSIEQQLTSPTAKGILMVIFLGLAIFIWKNLDRWKEILMTVLAIAIGAAIF
FKAPALANWFMSIF

Nucleotide


Download         Length: 285 bp        

>NTDB_id=576536 MPG67_RS02505 WP_000736478.1 504465..504749(-) (comB2) [Helicobacter pylori strain Hpfe005]
ATGAAAAAATTAAGTCATTTTAGAAAGCTCATCGCCTTTTTAGGTTTTTCACCACTTTTACTACAAGCGGATATGACTAC
CTTTTTTAATAGTATTGAACAACAACTCACTAGCCCCACCGCTAAGGGTATTTTGATGGTCATTTTTTTAGGGCTTGCTA
TTTTTATATGGAAAAATTTAGACAGATGGAAAGAAATCTTAATGACAGTCCTTGCTATTGCCATAGGCGCTGCAATCTTT
TTTAAAGCCCCAGCCTTAGCTAATTGGTTTATGAGTATTTTTTAA

Domains

Predicted by InterProScan.

TrbC/VIRB2 pilin (TrbC)

(4-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

57.143

96.809

0.553