Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   MPF98_RS05130 Genome accession   NZ_CP094153
Coordinates   1079814..1080989 (+) Length   391 a.a.
NCBI ID   WP_245048805.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe010     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1074814..1085989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF98_RS05105 (MPF98_05105) - 1075100..1075996 (+) 897 WP_245048803.1 response regulator -
  MPF98_RS05110 (MPF98_05110) - 1076222..1077088 (+) 867 WP_080127562.1 5'-3' exonuclease -
  MPF98_RS05115 (MPF98_05115) - 1077152..1078402 (-) 1251 WP_245047189.1 outer membrane family protein -
  MPF98_RS05120 (MPF98_05120) - 1078570..1079436 (+) 867 WP_000045783.1 DnaJ family protein -
  MPF98_RS05125 (MPF98_05125) - 1079446..1079817 (+) 372 WP_180451727.1 helix-turn-helix transcriptional regulator -
  MPF98_RS05130 (MPF98_05130) rarA 1079814..1080989 (+) 1176 WP_245048805.1 replication-associated recombination protein A Machinery gene
  MPF98_RS05135 (MPF98_05135) fur 1081148..1081600 (+) 453 WP_000824985.1 ferric iron uptake transcriptional regulator -
  MPF98_RS05140 (MPF98_05140) - 1081619..1082116 (-) 498 WP_180584691.1 DUF2147 domain-containing protein -
  MPF98_RS05145 (MPF98_05145) - 1082113..1082649 (-) 537 WP_220996508.1 YhcH/YjgK/YiaL family protein -
  MPF98_RS05150 (MPF98_05150) fliY 1082677..1083540 (-) 864 WP_245048807.1 flagellar motor switch protein FliY -
  MPF98_RS05155 (MPF98_05155) fliM 1083544..1084608 (-) 1065 WP_000763605.1 flagellar motor switch protein FliM -
  MPF98_RS05160 (MPF98_05160) - 1084601..1085377 (-) 777 WP_000602378.1 RNA polymerase sigma factor FliA -
  MPF98_RS05165 (MPF98_05165) - 1085355..1085669 (-) 315 WP_000867999.1 hypothetical protein -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43849.50 Da        Isoelectric Point: 8.0457

>NTDB_id=576504 MPF98_RS05130 WP_245048805.1 1079814..1080989(+) (rarA) [Helicobacter pylori strain Hpfe010]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHTFFYGPPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLKKSDLDKLCAK
ALTLLKKQIEPSAKTYLLNNSAGDARALLNLLDLSAKIEDPITLETLQSLRPHSPNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVVFASEDIGNANPNALNLATSCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
KAINQALDCIQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=576504 MPF98_RS05130 WP_245048805.1 1079814..1080989(+) (rarA) [Helicobacter pylori strain Hpfe010]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATCTAATAGGCAAAGACGCCCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCCCATACCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATCGCCCGCATGCTAGAGCGCCCCATTCTTTTATTTAATGCGACGGATTTCAAATTAGAGGATTTACGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCGGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAAAAAGAGCGATTTAGACAAGCTTTGCGCTAAA
GCTTTAACATTACTCAAAAAACAAATAGAGCCTAGCGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGATGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAGATCCTATCACTTTAGAAACGCTGCAATCCTTACGGCCTCATA
GCCCAAATGACGGATCTTATAGCGATGATACGCATTATAATCTTACTAGCGCTCTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCAATCTATTATCTGGCGCGCTTGATTGCTGGCGGGGAAAATCCGGAATTTATCGCCAGAAGGCTGGTGGT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTAAATTTAGCCACTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCACGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGTTCGCCCAAGTCTAACACGGCCTAT
AAAGCGATCAACCAAGCTTTGGATTGTATTCAAAAAGGCTCACTCTACCCCATTCCTAAACACCTGCTGCCTAACGCTAA
AGACTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)

AAA C-terminal domain (AAA_assoc_2)

(168-237)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

37.379

100

0.394