Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   LEUCM_RS01140 Genome accession   NZ_AP017929
Coordinates   214271..216064 (-) Length   597 a.a.
NCBI ID   WP_025016206.1    Uniprot ID   -
Organism   Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 strain LT-13     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 209271..221064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LEUCM_RS01130 (LACBS_00201) - 210847..211644 (+) 798 WP_016264576.1 tyrosine-protein phosphatase -
  LEUCM_RS01135 (LACBS_00202) - 212046..214094 (+) 2049 WP_035147362.1 UvrD-helicase domain-containing protein -
  LEUCM_RS01140 (LACBS_00203) rcrQ 214271..216064 (-) 1794 WP_025016206.1 ABC transporter ATP-binding protein Regulator
  LEUCM_RS01145 (LACBS_00204) - 216068..217780 (-) 1713 WP_016264573.1 ABC transporter ATP-binding protein -
  LEUCM_RS01150 (LACBS_00205) - 217923..218594 (+) 672 WP_016264572.1 TetR/AcrR family transcriptional regulator -
  LEUCM_RS01155 (LACBS_00206) - 218647..219822 (-) 1176 WP_016264571.1 multidrug effflux MFS transporter -
  LEUCM_RS01160 (LACBS_00207) rpsN 220172..220441 (-) 270 WP_025016208.1 30S ribosomal protein S14 -

Sequence

Protein


Download         Length: 597 a.a.        Molecular weight: 66902.89 Da        Isoelectric Point: 5.6404

>NTDB_id=57646 LEUCM_RS01140 WP_025016206.1 214271..216064(-) (rcrQ) [Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 strain LT-13]
MKEFKRAMVFFYHYLKRYKPSFAIILVMTVFATYLQVKAPEYIGDALNELVKYATKFQVLKAQHLPTSGASKDAFIDVIV
SLVLFYVLSSAATFVSSAAFSRVNALSTNRMRIGLFNKLQKMQIKYFDRHSDGDILSRFTSDLDNIYNAMNQVLSQLVSG
TALLIGLLIMMFRKDTQLAWVTIASVPISFILAWIIINKAQKYVNVQQDEVGKLNGYINEKITGQKVIITNSLQAETIDG
FVEHNESVRKATLKGQIYSGMIFPLMQGMSLVNTAIVIFFGSWLAVNGDIKKSVALGLVVTFVQYSQQFYNQIAQLSSSY
SMIQLAITGARRVNEVFDEDDEIRPTDGQQFNGIERSVTMEHVDFSYLPGKQILHDVNIEVDKGQMIALVGPTGSGKTTV
MNLMNRFYDVDQGAVKIDGVDIRDMDLDTLRSHVGIVLQESVLFAGTIRDNIVFGKPDATDDEVIAAAQQAHIHDFIMTL
EDGYQTKVSEEDNVFSTGQKQLISIARTIITDPALLILDEATSNVDTVTESHIQKAMENVIQGRTSFVIAHRLKTVLNAD
RIIVLKDGRIIEEGNHQELLAQEGFYAELYNNQFVFE

Nucleotide


Download         Length: 1794 bp        

>NTDB_id=57646 LEUCM_RS01140 WP_025016206.1 214271..216064(-) (rcrQ) [Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 strain LT-13]
ATGAAAGAATTTAAACGTGCCATGGTCTTTTTCTACCATTATTTAAAACGCTATAAACCATCTTTTGCGATTATCCTTGT
GATGACCGTCTTTGCCACTTATTTACAAGTCAAGGCGCCCGAATATATTGGGGATGCACTGAATGAACTGGTTAAATACG
CCACGAAGTTTCAGGTTTTAAAAGCCCAGCATTTACCAACCAGTGGGGCTTCTAAAGATGCTTTTATTGATGTCATTGTG
TCGTTAGTCCTTTTTTATGTCTTGAGTTCAGCGGCAACCTTTGTCTCAAGCGCCGCTTTTTCACGCGTCAATGCGTTATC
GACCAACCGGATGCGGATTGGGTTATTCAATAAATTACAAAAGATGCAGATTAAATATTTTGATCGTCATTCAGATGGCG
ATATCCTCAGCCGTTTTACGAGTGATTTAGATAATATTTATAACGCGATGAACCAAGTGTTAAGTCAATTAGTGTCGGGA
ACGGCCTTGTTGATTGGTTTGTTAATTATGATGTTTAGAAAAGATACCCAATTGGCGTGGGTTACAATCGCGTCAGTGCC
AATTTCGTTTATTTTAGCGTGGATCATTATCAACAAAGCGCAAAAATACGTCAATGTGCAACAAGATGAAGTGGGTAAGT
TAAATGGTTATATCAATGAAAAAATCACAGGGCAAAAAGTGATTATTACCAACAGCCTACAAGCTGAAACAATTGACGGC
TTTGTTGAACATAATGAAAGTGTCCGGAAAGCAACCTTGAAAGGCCAAATTTATTCAGGGATGATTTTCCCATTGATGCA
AGGGATGTCACTGGTTAATACGGCGATCGTGATCTTCTTTGGGAGCTGGCTAGCGGTCAACGGGGATATCAAAAAATCCG
TTGCTTTAGGATTAGTCGTGACTTTCGTGCAATATTCACAACAATTCTATAATCAAATTGCGCAACTCTCATCAAGTTAC
AGCATGATTCAATTGGCAATTACCGGTGCGCGCCGGGTCAACGAAGTCTTTGATGAAGATGATGAAATTCGTCCAACTGA
TGGACAACAATTCAACGGAATTGAACGTTCAGTAACGATGGAACATGTTGATTTTAGTTACTTACCAGGCAAACAAATCC
TGCACGACGTGAATATTGAGGTTGATAAGGGCCAAATGATTGCGTTGGTTGGACCAACTGGCTCTGGTAAGACGACGGTC
ATGAACTTGATGAACCGGTTCTATGATGTGGATCAAGGCGCCGTTAAGATTGACGGCGTTGATATCCGTGACATGGATTT
AGACACATTGCGGTCACACGTGGGGATTGTTCTTCAAGAATCAGTCTTATTTGCAGGGACGATTCGCGATAACATCGTCT
TTGGGAAACCAGATGCGACTGATGATGAAGTGATTGCAGCGGCGCAACAAGCGCACATTCACGATTTCATCATGACGTTG
GAAGATGGCTATCAAACGAAGGTTAGCGAAGAAGACAACGTCTTTAGTACGGGTCAAAAACAATTGATCAGTATTGCGCG
GACGATTATCACGGATCCAGCGCTCTTGATTTTAGATGAAGCAACAAGTAACGTTGATACGGTGACTGAAAGCCATATCC
AAAAAGCAATGGAAAATGTGATTCAGGGACGGACCAGTTTTGTAATTGCCCATCGCTTGAAAACCGTCTTAAATGCGGAT
CGGATTATCGTCTTAAAAGATGGCCGAATTATCGAAGAAGGCAATCATCAAGAATTACTAGCACAAGAAGGCTTCTACGC
AGAATTATATAACAATCAATTTGTATTTGAATAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(26-311)

ABC transporter (ABC_tran)

(374-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

38.632

97.99

0.379

Multiple sequence alignment