Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   MPG81_RS04970 Genome accession   NZ_CP094151
Coordinates   1055763..1056938 (+) Length   391 a.a.
NCBI ID   WP_245086297.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe019     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1050763..1061938
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG81_RS04945 (MPG81_04945) - 1051027..1051923 (+) 897 WP_000697547.1 OriC activity response regulator -
  MPG81_RS04950 (MPG81_04950) - 1052148..1053011 (+) 864 WP_245088362.1 5'-3' exonuclease -
  MPG81_RS04955 (MPG81_04955) - 1053101..1054351 (-) 1251 WP_245086294.1 outer membrane family protein -
  MPG81_RS04960 (MPG81_04960) - 1054519..1055385 (+) 867 WP_121025156.1 DnaJ C-terminal domain-containing protein -
  MPG81_RS04965 (MPG81_04965) - 1055395..1055766 (+) 372 WP_000332994.1 helix-turn-helix transcriptional regulator -
  MPG81_RS04970 (MPG81_04970) rarA 1055763..1056938 (+) 1176 WP_245086297.1 replication-associated recombination protein A Machinery gene
  MPG81_RS04975 (MPG81_04975) fur 1057098..1057550 (+) 453 WP_000824985.1 ferric iron uptake transcriptional regulator -
  MPG81_RS04980 (MPG81_04980) - 1057570..1058067 (-) 498 WP_075646189.1 DUF2147 domain-containing protein -
  MPG81_RS04985 (MPG81_04985) - 1058064..1058600 (-) 537 WP_245086300.1 YhcH/YjgK/YiaL family protein -
  MPG81_RS04990 (MPG81_04990) fliY 1058628..1059500 (-) 873 WP_245086303.1 flagellar motor switch protein FliY -
  MPG81_RS04995 (MPG81_04995) fliM 1059504..1060568 (-) 1065 WP_000763605.1 flagellar motor switch protein FliM -
  MPG81_RS05000 (MPG81_05000) - 1060561..1061337 (-) 777 WP_000602378.1 RNA polymerase sigma factor FliA -
  MPG81_RS05005 (MPG81_05005) - 1061315..1061629 (-) 315 WP_000867999.1 hypothetical protein -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43875.49 Da        Isoelectric Point: 7.8110

>NTDB_id=576455 MPG81_RS04970 WP_245086297.1 1055763..1056938(+) (rarA) [Helicobacter pylori strain Hpfe019]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDKLCIK
ALTLLKKQIEPGAKTYLLNNSAGDARALLNLLDLSAKIEDPITLETLQSLRPHSPNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVVFASEDIGNANPNALNLAASCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDYIQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=576455 MPG81_RS04970 WP_245086297.1 1055763..1056938(+) (rarA) [Helicobacter pylori strain Hpfe019]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATCTAATAGGCAAAGACGCCCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCCCACGCCTTTTTCTATGGCCCTCCTGGCGTGGGAAAAACAAGCTTGG
CTCAAATCATCGCCCGCATGCTAGAGCGCCCCATTCTTTTATTTAATGCGACGGATTTCAAGTTAGAGGATTTACGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCCGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTGACCCCCCTAAACAAGAGCGATTTAGACAAGCTTTGTATTAAA
GCTTTAACATTACTCAAAAAACAAATAGAGCCTGGCGCTAAAACCTACCTTTTAAACAACAGCGCTGGCGATGCCAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAGATCCTATCACTTTAGAAACGCTGCAATCCTTACGGCCTCATA
GCCCAAATGACGGATCTTATAGCGATGATACGCATTATAATCTTACTAGCGCTCTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCAATCTATTATCTGGCGCGCTTGATTGCTGGCGGGGAAAATCCGGAATTTATCGCCAGAAGGCTGGTGGT
TTTTGCGAGCGAAGATATTGGTAATGCTAACCCAAACGCCCTTAATTTAGCCGCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGTTCGCCCAAGTCTAACACGGCTTAT
AGAGCGATCAATCAGGCTTTGGATTATATTCAAAAAGGCTCACTCTACCCCATTCCTAAACACCTGCTGCCTAACGCTAA
AGACTATCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(168-237)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

37.621

100

0.396