Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   MPG09_RS05120 Genome accession   NZ_CP094150
Coordinates   1094372..1095547 (+) Length   391 a.a.
NCBI ID   WP_245026527.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe022     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1089372..1100547
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG09_RS05095 (MPG09_05095) - 1089617..1090513 (+) 897 WP_000697547.1 OriC activity response regulator -
  MPG09_RS05100 (MPG09_05100) - 1090751..1091617 (+) 867 WP_245022559.1 5'-3' exonuclease -
  MPG09_RS05105 (MPG09_05105) - 1091710..1092960 (-) 1251 WP_245026523.1 outer membrane family protein -
  MPG09_RS05110 (MPG09_05110) - 1093128..1093994 (+) 867 WP_245026525.1 DnaJ C-terminal domain-containing protein -
  MPG09_RS05115 (MPG09_05115) - 1094004..1094375 (+) 372 WP_000332994.1 helix-turn-helix transcriptional regulator -
  MPG09_RS05120 (MPG09_05120) rarA 1094372..1095547 (+) 1176 WP_245026527.1 replication-associated recombination protein A Machinery gene
  MPG09_RS05125 (MPG09_05125) fur 1095707..1096159 (+) 453 WP_000824985.1 ferric iron uptake transcriptional regulator -
  MPG09_RS05130 (MPG09_05130) - 1096179..1096676 (-) 498 WP_245026529.1 DUF2147 domain-containing protein -
  MPG09_RS05135 (MPG09_05135) - 1096673..1097209 (-) 537 WP_245026531.1 YhcH/YjgK/YiaL family protein -
  MPG09_RS05140 (MPG09_05140) fliY 1097238..1098101 (-) 864 WP_245026533.1 flagellar motor switch protein FliY -
  MPG09_RS05145 (MPG09_05145) fliM 1098105..1099169 (-) 1065 WP_000763605.1 flagellar motor switch protein FliM -
  MPG09_RS05150 (MPG09_05150) - 1099162..1099938 (-) 777 WP_180452899.1 RNA polymerase sigma factor FliA -
  MPG09_RS05155 (MPG09_05155) - 1099916..1100230 (-) 315 WP_000867999.1 hypothetical protein -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43907.48 Da        Isoelectric Point: 7.8110

>NTDB_id=576417 MPG09_RS05120 WP_245026527.1 1094372..1095547(+) (rarA) [Helicobacter pylori strain Hpfe022]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDKLCAK
ALTLLKKQIEPSAKTYLLNNSAGDARALLNLLDLSAKIEDPITLETLQSLRPHSPNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RTINQALDYIQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=576417 MPG09_RS05120 WP_245026527.1 1094372..1095547(+) (rarA) [Helicobacter pylori strain Hpfe022]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATCTAATAGGCAAAGACGCCCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCCCACGCCTTTTTCTATGGCCCTCCTGGCGTGGGAAAAACAAGCCTGG
CTCAAATCATCGCCCGCATGCTAGAGCGCCCCATTCTTTTATTCAATGCGACGGATTTCAAATTAGAGGATTTACGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCCGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCTTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAACAAGAGCGATTTAGACAAGCTTTGCGCTAAA
GCTTTAACATTGCTCAAAAAACAAATAGAGCCTAGCGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGATGCCAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAGATCCTATCACTTTAGAAACGCTGCAATCCCTACGGCCTCATA
GCCCAAATGACGGATCTTATAGCGATGATACGCATTATAATCTCACTAGCGCTCTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTATTATCTAGCGCGCTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGGCTGGTGAT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTAAATTTAGCCGCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGTTCGCCCAAGTCTAACACGGCTTAT
AGAACGATCAACCAGGCTTTGGATTATATTCAAAAAGGCTCACTCTACCCCATTCCTAAACACCTGCTGCCTAACGCTAA
AGACTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAAATAAGAAATTGA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)

AAA C-terminal domain (AAA_assoc_2)

(168-237)

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

36.893

100

0.389