Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   MPG09_RS03920 Genome accession   NZ_CP094150
Coordinates   837734..837997 (+) Length   87 a.a.
NCBI ID   WP_001177715.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe022     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 832734..842997
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG09_RS03890 (MPG09_03890) - 833752..834045 (-) 294 WP_000577946.1 YggT family protein -
  MPG09_RS03895 (MPG09_03895) gltX 834042..835361 (-) 1320 WP_245026239.1 glutamate--tRNA ligase -
  MPG09_RS03900 (MPG09_03900) - 835527..836006 (-) 480 WP_245026241.1 nitroreductase family protein -
  MPG09_RS03905 (MPG09_03905) - 836071..836859 (+) 789 WP_245026243.1 integrase -
  MPG09_RS03910 (MPG09_03910) - 836963..837442 (+) 480 WP_245026245.1 hypothetical protein -
  MPG09_RS03915 (MPG09_03915) comB2 837439..837723 (+) 285 WP_000736478.1 TrbC/VirB2 family protein Machinery gene
  MPG09_RS03920 (MPG09_03920) comB3 837734..837997 (+) 264 WP_001177715.1 hypothetical protein Machinery gene
  MPG09_RS03925 (MPG09_03925) - 838008..838244 (+) 237 WP_245026247.1 hypothetical protein -
  MPG09_RS03930 (MPG09_03930) - 838244..840826 (+) 2583 Protein_761 VirB4 family type IV secretion/conjugal transfer ATPase -
  MPG09_RS03935 (MPG09_03935) - 840823..840957 (+) 135 WP_000738749.1 hypothetical protein -
  MPG09_RS03940 (MPG09_03940) - 840950..842119 (+) 1170 WP_245026249.1 VirB8/TrbF family protein -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 9988.86 Da        Isoelectric Point: 5.7206

>NTDB_id=576409 MPG09_RS03920 WP_001177715.1 837734..837997(+) (comB3) [Helicobacter pylori strain Hpfe022]
MQLVGISVSNLKEISSKEKFLWLNAKSFLIAGFVPFVMIPWLDFLNSLMLYVCFLLVFSIAEFFDEDISDILIAHSKIKT
KTNSFYA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=576409 MPG09_RS03920 WP_001177715.1 837734..837997(+) (comB3) [Helicobacter pylori strain Hpfe022]
ATGCAATTAGTCGGCATTTCAGTTTCTAATCTCAAAGAAATCAGTTCTAAAGAAAAGTTTCTTTGGCTCAATGCTAAGAG
CTTTTTAATCGCAGGATTTGTTCCTTTTGTAATGATACCTTGGCTAGATTTTTTAAATTCTTTAATGCTGTATGTGTGCT
TTTTATTGGTTTTTAGCATAGCGGAGTTCTTTGATGAAGATATAAGCGACATTTTAATCGCCCATTCTAAGATTAAAACC
AAAACTAATTCATTTTATGCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

59.77

100

0.598