Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   MPF84_RS05165 Genome accession   NZ_CP094149
Coordinates   1087593..1088768 (+) Length   391 a.a.
NCBI ID   WP_245085117.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe023     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1082593..1093768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF84_RS05140 (MPF84_05140) - 1082876..1083772 (+) 897 WP_245085111.1 response regulator -
  MPF84_RS05145 (MPF84_05145) - 1083997..1084863 (+) 867 WP_245086785.1 5'-3' exonuclease -
  MPF84_RS05150 (MPF84_05150) - 1084931..1086181 (-) 1251 WP_245085114.1 outer membrane family protein -
  MPF84_RS05155 (MPF84_05155) - 1086349..1087215 (+) 867 WP_050851217.1 DnaJ family protein -
  MPF84_RS05160 (MPF84_05160) - 1087225..1087596 (+) 372 WP_000332994.1 helix-turn-helix transcriptional regulator -
  MPF84_RS05165 (MPF84_05165) rarA 1087593..1088768 (+) 1176 WP_245085117.1 replication-associated recombination protein A Machinery gene
  MPF84_RS05170 (MPF84_05170) fur 1088927..1089379 (+) 453 WP_000824992.1 ferric iron uptake transcriptional regulator -
  MPF84_RS05175 (MPF84_05175) - 1089398..1089895 (-) 498 WP_180649950.1 DUF2147 domain-containing protein -
  MPF84_RS05180 (MPF84_05180) - 1089892..1090428 (-) 537 WP_245085120.1 YhcH/YjgK/YiaL family protein -
  MPF84_RS05185 (MPF84_05185) fliY 1090456..1091313 (-) 858 WP_245085123.1 flagellar motor switch protein FliY -
  MPF84_RS05190 (MPF84_05190) fliM 1091317..1092381 (-) 1065 WP_033123133.1 flagellar motor switch protein FliM -
  MPF84_RS05195 (MPF84_05195) - 1092374..1093150 (-) 777 WP_245085126.1 RNA polymerase sigma factor FliA -
  MPF84_RS05200 (MPF84_05200) - 1093128..1093442 (-) 315 WP_000868000.1 hypothetical protein -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43844.37 Da        Isoelectric Point: 7.5253

>NTDB_id=576375 MPF84_RS05165 WP_245085117.1 1087593..1088768(+) (rarA) [Helicobacter pylori strain Hpfe023]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAHALERPILLFNATDFKLEDLRL
KLKNYQNTLLKPIVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDKLCTK
ALTLLKKQIEPSAKTYLLNNSAGDARALLNLLDLSAKIEDPITLETLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVVFASEDIGNANPNALNLAASCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDYIQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=576375 MPF84_RS05165 WP_245085117.1 1087593..1088768(+) (rarA) [Helicobacter pylori strain Hpfe023]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATCTAATAGGGAAAGACGCTCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCCCACGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATCGCTCACGCACTAGAGCGCCCCATTCTTTTATTCAATGCGACGGATTTCAAATTAGAGGATTTACGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCCATTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTGGGGGCTAGCACGCAAGATCCTAATTACAGCTTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTGACCCCCCTAAACAAGAGCGATTTAGACAAACTTTGCACTAAA
GCTTTGACATTGCTCAAAAAACAAATAGAGCCTAGCGCTAAAACCTATCTTTTGAACAACAGCGCTGGCGATGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAGATAGAAGATCCTATCACTTTAGAAACGCTGCAATCCTTACGGCCTCATA
GCCTGAATGACGGATCTTATAGCGATGATACGCATTATAATCTTACTAGCGCTTTAATCAAATCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTATTATCTGGCGCGCTTGATTGCTGGTGGGGAAAACCCGGAATTTATCGCCAGAAGGCTGGTGGT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTAAATTTAGCCGCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGTTCGCCCAAGTCTAATACGGCCTAT
AGAGCGATCAATCAGGCTTTGGATTATATTCAAAAAGGCTCACTCTACCCCATTCCTAAACACCTGCTGCCTAACGCTAA
AGACTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(168-237)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

37.621

100

0.396