Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   KPG64_RS20220 Genome accession   NZ_CP076539
Coordinates   3977199..3977978 (-) Length   259 a.a.
NCBI ID   WP_000421290.1    Uniprot ID   A0A9W5VKA1
Organism   Bacillus thuringiensis strain GR007     
Function   repression of comK (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 3954824..3994836 3977199..3977978 within 0


Gene organization within MGE regions


Location: 3954824..3994836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KPG64_RS20120 (KPG64_20120) rpsO 3955822..3956091 (-) 270 WP_001229392.1 30S ribosomal protein S15 -
  KPG64_RS20125 (KPG64_20125) ribF 3956192..3957163 (-) 972 WP_000766703.1 bifunctional riboflavin kinase/FAD synthetase -
  KPG64_RS20130 (KPG64_20130) truB 3957207..3958130 (-) 924 WP_000399365.1 tRNA pseudouridine(55) synthase TruB -
  KPG64_RS20135 (KPG64_20135) rbfA 3958217..3958573 (-) 357 WP_000776437.1 30S ribosome-binding factor RbfA -
  KPG64_RS20140 (KPG64_20140) - 3958589..3958870 (-) 282 WP_000634349.1 DUF503 domain-containing protein -
  KPG64_RS20145 (KPG64_20145) infB 3958867..3960933 (-) 2067 WP_000036346.1 translation initiation factor IF-2 -
  KPG64_RS20150 (KPG64_20150) - 3960938..3961249 (-) 312 WP_001286522.1 YlxQ family RNA-binding protein -
  KPG64_RS20155 (KPG64_20155) - 3961250..3961522 (-) 273 WP_000071123.1 YlxR family protein -
  KPG64_RS20160 (KPG64_20160) nusA 3961534..3962640 (-) 1107 WP_000102599.1 transcription termination factor NusA -
  KPG64_RS20165 (KPG64_20165) rimP 3962658..3963128 (-) 471 WP_000359095.1 ribosome maturation factor RimP -
  KPG64_RS20170 (KPG64_20170) - 3963462..3967763 (-) 4302 WP_000059996.1 PolC-type DNA polymerase III -
  KPG64_RS20175 (KPG64_20175) - 3967888..3969588 (-) 1701 WP_000814295.1 proline--tRNA ligase -
  KPG64_RS20180 (KPG64_20180) rseP 3969698..3970954 (-) 1257 WP_001090241.1 RIP metalloprotease RseP -
  KPG64_RS20185 (KPG64_20185) dxr 3970972..3972114 (-) 1143 WP_000790358.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  KPG64_RS20190 (KPG64_20190) cdsA 3972138..3972929 (-) 792 WP_000813589.1 phosphatidate cytidylyltransferase -
  KPG64_RS20195 (KPG64_20195) uppS 3972947..3973723 (-) 777 WP_000971296.1 isoprenyl transferase -
  KPG64_RS20200 (KPG64_20200) frr 3973809..3974366 (-) 558 WP_000531505.1 ribosome recycling factor -
  KPG64_RS20205 (KPG64_20205) pyrH 3974369..3975091 (-) 723 WP_000042669.1 UMP kinase -
  KPG64_RS20210 (KPG64_20210) tsf 3975158..3976045 (-) 888 WP_001018576.1 translation elongation factor Ts -
  KPG64_RS20215 (KPG64_20215) rpsB 3976149..3976850 (-) 702 WP_000111485.1 30S ribosomal protein S2 -
  KPG64_RS20220 (KPG64_20220) codY 3977199..3977978 (-) 780 WP_000421290.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  KPG64_RS20225 (KPG64_20225) hslU 3978056..3979447 (-) 1392 WP_000550084.1 ATP-dependent protease ATPase subunit HslU -
  KPG64_RS20230 (KPG64_20230) hslV 3979470..3980012 (-) 543 WP_000526274.1 ATP-dependent protease proteolytic subunit HslV -
  KPG64_RS20235 (KPG64_20235) xerC 3980055..3980954 (-) 900 WP_001101244.1 tyrosine recombinase XerC -
  KPG64_RS20240 (KPG64_20240) trmFO 3981020..3982324 (-) 1305 WP_000213006.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  KPG64_RS20245 (KPG64_20245) topA 3982373..3984451 (-) 2079 WP_001286957.1 type I DNA topoisomerase -
  KPG64_RS20250 (KPG64_20250) dprA 3984596..3985465 (-) 870 WP_000818044.1 DNA-processing protein DprA -
  KPG64_RS20255 (KPG64_20255) sucD 3985554..3986456 (-) 903 WP_000115178.1 succinate--CoA ligase subunit alpha -
  KPG64_RS20260 (KPG64_20260) sucC 3986476..3987636 (-) 1161 WP_001020791.1 ADP-forming succinate--CoA ligase subunit beta -
  KPG64_RS20265 (KPG64_20265) - 3987830..3988603 (-) 774 WP_016077303.1 ribonuclease HII -
  KPG64_RS20270 (KPG64_20270) ylqF 3988660..3989550 (-) 891 WP_000236702.1 ribosome biogenesis GTPase YlqF -
  KPG64_RS20275 (KPG64_20275) lepB 3989571..3990122 (-) 552 WP_000711853.1 signal peptidase I -
  KPG64_RS20280 (KPG64_20280) rplS 3990224..3990568 (-) 345 WP_001186516.1 50S ribosomal protein L19 -
  KPG64_RS20285 (KPG64_20285) trmD 3990715..3991449 (-) 735 WP_000686901.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  KPG64_RS20290 (KPG64_20290) rimM 3991449..3991964 (-) 516 WP_000170274.1 ribosome maturation factor RimM -
  KPG64_RS20295 (KPG64_20295) - 3992085..3992312 (-) 228 WP_000737393.1 KH domain-containing protein -
  KPG64_RS20300 (KPG64_20300) rpsP 3992327..3992599 (-) 273 WP_000268748.1 30S ribosomal protein S16 -
  KPG64_RS20305 (KPG64_20305) ffh 3992701..3994050 (-) 1350 WP_000863460.1 signal recognition particle protein -
  KPG64_RS20310 (KPG64_20310) - 3994063..3994395 (-) 333 WP_000891062.1 putative DNA-binding protein -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28793.05 Da        Isoelectric Point: 4.7165

>NTDB_id=576341 KPG64_RS20220 WP_000421290.1 3977199..3977978(-) (codY) [Bacillus thuringiensis strain GR007]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=576341 KPG64_RS20220 WP_000421290.1 3977199..3977978(-) (codY) [Bacillus thuringiensis strain GR007]
ATGGAATTATTAGCAAAAACGAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGGAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCAAACGTATTCGTAGTTAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAAAACGAACGCATGAAGCAAATGCTTGCAGAACGTCAATTCCCAGAAGAATATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTGGATGTGAACAGTGCTTACACAGCATTCCCAGTAGAAAACAGAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGTGGTGAGCGTCTAGGTACATTAGTATTAGCTCGTCTAGGTCAAG
AGTTCTTAGATGACGATTTAATCCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
TGAGCACATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GCTCTGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTTATTGAGTCTCGCTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAGGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.467

100

0.815
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459