Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   KOI47_RS36250 Genome accession   NZ_CP076538
Coordinates   2085658..2086413 (+) Length   251 a.a.
NCBI ID   WP_332461452.1    Uniprot ID   -
Organism   Amycolatopsis aidingensis strain YIM 96748     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2080658..2091413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KOI47_RS09870 - 2082268..2082909 (-) 642 WP_216215686.1 TetR/AcrR family transcriptional regulator -
  KOI47_RS09875 - 2082991..2084769 (+) 1779 WP_216215687.1 ABC transporter ATP-binding protein -
  KOI47_RS36245 - 2084898..2085590 (+) 693 Protein_1962 ABC transporter ATP-binding protein -
  KOI47_RS36250 rcrQ 2085658..2086413 (+) 756 WP_332461452.1 ATP-binding cassette domain-containing protein Regulator
  KOI47_RS09885 - 2086429..2087061 (-) 633 WP_216215688.1 TetR/AcrR family transcriptional regulator -
  KOI47_RS35450 - 2087150..2087329 (+) 180 WP_232376652.1 hypothetical protein -
  KOI47_RS36125 - 2087333..2087608 (+) 276 Protein_1966 MFS transporter -
  KOI47_RS36130 - 2087796..2088584 (+) 789 WP_269756701.1 MFS transporter -
  KOI47_RS09895 - 2088602..2089099 (+) 498 WP_216215689.1 GNAT family N-acetyltransferase -
  KOI47_RS36255 - 2089340..2089555 (-) 216 WP_332461453.1 ATP-binding protein -
  KOI47_RS09900 - 2089824..2090573 (-) 750 WP_216215690.1 hypothetical protein -
  KOI47_RS09905 - 2090570..2090866 (-) 297 WP_216215691.1 DUF2795 domain-containing protein -

Sequence

Protein


Download         Length: 251 a.a.        Molecular weight: 27208.75 Da        Isoelectric Point: 4.7437

>NTDB_id=576312 KOI47_RS36250 WP_332461452.1 2085658..2086413(+) (rcrQ) [Amycolatopsis aidingensis strain YIM 96748]
MDPDTVTGRVEFAGVSFRYRRDEPLIENLSLTVHPGQTVAIVGPTGAGKTTLVNLLLRFYDLDAGTITVDGTDIAEMSRH
GLRRNIGMVLQDTWLFGGTIAENIAYGKPDATREDIVTAAQATHADHLIRTLPDGYDTVVEEDGTLSAGERQLVTIARAF
LVRPAILVLDEATSSVDTRTEMLVQRAMSSLRQGRTSFVIAHRLSTIRDADLILVMEAGRIVEQGSHDDLLDAGGAYARL
YAAQFAQPATA

Nucleotide


Download         Length: 756 bp        

>NTDB_id=576312 KOI47_RS36250 WP_332461452.1 2085658..2086413(+) (rcrQ) [Amycolatopsis aidingensis strain YIM 96748]
GTGGACCCGGATACGGTGACCGGCAGGGTGGAGTTCGCCGGGGTGTCCTTCCGGTACCGCCGCGACGAGCCGCTGATCGA
GAACCTGTCGCTGACCGTCCATCCCGGACAGACAGTGGCGATTGTGGGCCCCACCGGAGCGGGCAAGACCACCCTGGTGA
ACCTGCTGCTGCGGTTCTACGACCTCGACGCCGGCACGATCACCGTCGACGGGACGGATATCGCCGAGATGAGCAGGCAC
GGACTCCGCCGCAACATCGGCATGGTGCTGCAGGACACCTGGCTGTTCGGCGGGACGATCGCCGAGAACATCGCCTACGG
CAAGCCGGACGCCACGCGCGAGGACATCGTCACGGCCGCCCAGGCGACACATGCCGACCACCTCATCCGGACCCTGCCCG
ACGGTTATGACACCGTCGTCGAGGAGGACGGCACACTCAGCGCCGGGGAACGGCAACTGGTCACCATCGCCCGCGCGTTC
CTCGTCCGGCCAGCCATCCTGGTGCTGGACGAGGCGACCAGCTCGGTGGACACCCGCACCGAGATGCTCGTCCAGCGGGC
CATGAGCTCCCTGCGGCAGGGGCGCACCAGTTTCGTGATCGCCCACCGGCTGTCCACCATCCGCGACGCGGACCTGATCC
TGGTGATGGAGGCGGGCCGGATCGTCGAACAGGGCAGCCACGACGACCTGCTCGACGCGGGCGGCGCCTACGCCCGGTTG
TACGCCGCCCAGTTCGCCCAGCCGGCGACCGCGTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(27-174)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

56.557

97.211

0.55
  rcrP Streptococcus mutans UA159

37.959

97.61

0.371