Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   MPG27_RS05035 Genome accession   NZ_CP094147
Coordinates   1065653..1066828 (+) Length   391 a.a.
NCBI ID   WP_245041658.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe027     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1060653..1071828
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG27_RS05010 (MPG27_05010) - 1060949..1061845 (+) 897 WP_000697547.1 OriC activity response regulator -
  MPG27_RS05015 (MPG27_05015) - 1062071..1062928 (+) 858 WP_245043357.1 5'-3' exonuclease -
  MPG27_RS05020 (MPG27_05020) - 1062991..1064241 (-) 1251 WP_245041646.1 outer membrane family protein -
  MPG27_RS05025 (MPG27_05025) - 1064409..1065275 (+) 867 WP_245041656.1 DnaJ C-terminal domain-containing protein -
  MPG27_RS05030 (MPG27_05030) - 1065285..1065656 (+) 372 WP_000332994.1 helix-turn-helix transcriptional regulator -
  MPG27_RS05035 (MPG27_05035) rarA 1065653..1066828 (+) 1176 WP_245041658.1 replication-associated recombination protein A Machinery gene
  MPG27_RS05040 (MPG27_05040) fur 1066989..1067441 (+) 453 WP_000825001.1 ferric iron uptake transcriptional regulator -
  MPG27_RS05045 (MPG27_05045) - 1067461..1067958 (-) 498 WP_180638177.1 DUF2147 domain-containing protein -
  MPG27_RS05050 (MPG27_05050) - 1067955..1068491 (-) 537 WP_245041660.1 YhcH/YjgK/YiaL family protein -
  MPG27_RS05055 (MPG27_05055) fliY 1068520..1069383 (-) 864 WP_245041662.1 flagellar motor switch protein FliY -
  MPG27_RS05060 (MPG27_05060) fliM 1069387..1070451 (-) 1065 WP_000763605.1 flagellar motor switch protein FliM -
  MPG27_RS05065 (MPG27_05065) - 1070444..1071220 (-) 777 WP_000602378.1 RNA polymerase sigma factor FliA -
  MPG27_RS05070 (MPG27_05070) - 1071198..1071512 (-) 315 WP_000867999.1 hypothetical protein -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43859.44 Da        Isoelectric Point: 7.8110

>NTDB_id=576288 MPG27_RS05035 WP_245041658.1 1065653..1066828(+) (rarA) [Helicobacter pylori strain Hpfe027]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHTFFYGPPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDKLCAK
ALTLLKKQIEPSAKTYLLNNSAGDARALLNLLDLSAKIEDPITLETLQSLRPHSPNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVVFASEDIGNANPNALNLAASCLLSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDYIQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=576288 MPG27_RS05035 WP_245041658.1 1065653..1066828(+) (rarA) [Helicobacter pylori strain Hpfe027]
ATGAGCCTGACTTCACTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATCTAATAGGCAAAGACGCCCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCCCATACCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATCGCCCGCATGCTAGAGCGCCCCATTCTTTTATTCAATGCGACGGATTTCAAATTAGAGGATTTACGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCGGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAACAAGAGCGATTTAGACAAGCTTTGCGCTAAA
GCTTTAACATTGCTCAAAAAACAAATAGAGCCTAGCGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGATGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAGATCCTATCACTTTAGAAACGCTGCAATCCTTACGGCCTCATA
GCCCAAATGACGGATCTTATAGCGATGATACGCATTATAATCTTACTAGTGCGTTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTATTATCTGGCACGCTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGGTTGGTGGT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTAAATTTAGCCGCTTCTTGCTTGCTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGTTCGCCCAAGTCTAACACGGCTTAT
AGAGCGATCAATCAGGCTTTGGATTATATTCAAAAAGGCTCACTCTACCCCATTCCTAAACACCTGCTGCCTAACGCTAA
AGACTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTAGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(168-237)

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

37.379

100

0.394