Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   MPG27_RS00225 Genome accession   NZ_CP094147
Coordinates   52238..52516 (-) Length   92 a.a.
NCBI ID   WP_245042471.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe027     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 47238..57516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG27_RS00195 (MPG27_00195) - 47327..48062 (-) 736 Protein_37 hypothetical protein -
  MPG27_RS07620 - 48282..48962 (+) 681 Protein_38 CAAX protease -
  MPG27_RS00210 (MPG27_00210) - 49100..49351 (+) 252 WP_000006537.1 hypothetical protein -
  MPG27_RS00215 (MPG27_00215) - 49323..50126 (+) 804 WP_245042467.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein -
  MPG27_RS00220 (MPG27_00220) - 50439..51506 (-) 1068 WP_245042469.1 tyrosine-type recombinase/integrase -
  MPG27_RS00225 (MPG27_00225) comB2 52238..52516 (-) 279 WP_245042471.1 TrbC/VirB2 family protein Machinery gene
  MPG27_RS00230 (MPG27_00230) - 52513..52992 (-) 480 WP_000571125.1 hypothetical protein -
  MPG27_RS00235 (MPG27_00235) - 53096..53884 (-) 789 WP_245042473.1 integrase -
  MPG27_RS00240 (MPG27_00240) - 54184..54972 (-) 789 Protein_45 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  MPG27_RS00245 (MPG27_00245) - 54969..55970 (-) 1002 WP_000410544.1 DNA adenine methylase -
  MPG27_RS00250 (MPG27_00250) - 56027..57094 (-) 1068 WP_021303658.1 LptF/LptG family permease -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10449.76 Da        Isoelectric Point: 11.0850

>NTDB_id=576265 MPG27_RS00225 WP_245042471.1 52238..52516(-) (comB2) [Helicobacter pylori strain Hpfe027]
MKKLSHFRKLIAFLGFSPLLLQADMTTFFNSIEQQLTSPTAKGILMVIFLGLAIFIWKNLDRWKEILMTVLAIAIGAAIF
FKALHTLNKKPL

Nucleotide


Download         Length: 279 bp        

>NTDB_id=576265 MPG27_RS00225 WP_245042471.1 52238..52516(-) (comB2) [Helicobacter pylori strain Hpfe027]
ATGAAAAAATTAAGTCATTTTAGAAAGCTCATCGCCTTTTTAGGTTTTTCACCACTTTTACTACAAGCGGATATGACTAC
CTTTTTTAATAGTATTGAACAACAACTCACTAGCCCCACCGCTAAGGGTATTTTGATGGTCATTTTTTTAGGGCTTGCTA
TTTTTATATGGAAAAATTTAGACAGATGGAAAGAAATCTTAATGACAGTCCTTGCTATTGCCATAGGCGCTGCAATCTTT
TTTAAAGCCCTACACACTCTAAACAAAAAACCTCTCTAA

Domains

Predicted by InterProScan.

TrbC/VIRB2 pilin (TrbC)

(4-83)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

53.75

86.957

0.467