Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   MPG75_RS05040 Genome accession   NZ_CP094144
Coordinates   1057263..1058438 (+) Length   391 a.a.
NCBI ID   WP_245038818.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe029     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1052263..1063438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG75_RS05015 (MPG75_05015) - 1052551..1053447 (+) 897 WP_000697547.1 OriC activity response regulator -
  MPG75_RS05020 (MPG75_05020) - 1053673..1054539 (+) 867 WP_245040111.1 5'-3' exonuclease -
  MPG75_RS05025 (MPG75_05025) - 1054601..1055851 (-) 1251 WP_245038816.1 outer membrane family protein -
  MPG75_RS05030 (MPG75_05030) - 1056019..1056885 (+) 867 WP_245038817.1 DnaJ C-terminal domain-containing protein -
  MPG75_RS05035 (MPG75_05035) - 1056895..1057266 (+) 372 WP_000332994.1 helix-turn-helix transcriptional regulator -
  MPG75_RS05040 (MPG75_05040) rarA 1057263..1058438 (+) 1176 WP_245038818.1 replication-associated recombination protein A Machinery gene
  MPG75_RS05045 (MPG75_05045) fur 1058597..1059049 (+) 453 WP_000824985.1 ferric iron uptake transcriptional regulator -
  MPG75_RS05050 (MPG75_05050) - 1059069..1059566 (-) 498 WP_245038820.1 DUF2147 domain-containing protein -
  MPG75_RS05055 (MPG75_05055) - 1059563..1060099 (-) 537 WP_245038822.1 YhcH/YjgK/YiaL family protein -
  MPG75_RS05060 (MPG75_05060) fliY 1060128..1060991 (-) 864 WP_245038823.1 flagellar motor switch protein FliY -
  MPG75_RS05065 (MPG75_05065) fliM 1060995..1062059 (-) 1065 WP_000763605.1 flagellar motor switch protein FliM -
  MPG75_RS05070 (MPG75_05070) - 1062052..1062828 (-) 777 WP_120928552.1 RNA polymerase sigma factor FliA -
  MPG75_RS05075 (MPG75_05075) - 1062806..1063120 (-) 315 WP_000867999.1 hypothetical protein -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43939.53 Da        Isoelectric Point: 7.8110

>NTDB_id=576208 MPG75_RS05040 WP_245038818.1 1057263..1058438(+) (rarA) [Helicobacter pylori strain Hpfe029]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDKLCTK
ALTLLKKQIEPSAKTYLLNNSAGDARALLNLLDLSTKIEDPITLETLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVVFASEDIGNANPNALNLAASCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDYIQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=576208 MPG75_RS05040 WP_245038818.1 1057263..1058438(+) (rarA) [Helicobacter pylori strain Hpfe029]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATCTAATAGGCAAAGACGCCCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCCCATGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATCGCCCGCATGCTAGAGCGCCCCATTCTTTTATTTAATGCGACGGATTTCAAATTAGAGGATTTACGCCTT
AAACTTAAAAATTACCAAAACACTCTTTTAAAACCGGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAACAAGAGCGATTTAGACAAGCTTTGCACTAAA
GCTTTAACATTGCTCAAAAAACAAATAGAGCCTAGCGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGATGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCACTAAAATAGAAGATCCTATCACTTTAGAAACGCTGCAATCCTTACGGCCTCATA
GCCTAAATGACGGATCTTATAGCGATGATACGCATTATAATCTTACTAGCGCATTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCTATCTACTATCTAGCACGCTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGGCTGGTGGT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTAAATTTAGCCGCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATCTATCTGGCTTGTTCGCCCAAGTCTAACACGGCTTAT
AGAGCGATCAACCAGGCTTTGGATTATATTCAAAAAGGCTCACTCTACCCCATTCCTAAACACCTGCTGCCTAACGCTAA
AGACTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)

AAA C-terminal domain (AAA_assoc_2)

(168-237)

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

37.136

100

0.391