Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   MPG16_RS05120 Genome accession   NZ_CP094143
Coordinates   1101365..1102540 (+) Length   391 a.a.
NCBI ID   WP_245108066.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe032     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1096365..1107540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG16_RS05095 (MPG16_05095) - 1096652..1097548 (+) 897 WP_000697557.1 OriC activity response regulator -
  MPG16_RS05100 (MPG16_05100) - 1097804..1098640 (+) 837 WP_245108062.1 5'-3' exonuclease -
  MPG16_RS05105 (MPG16_05105) - 1098703..1099953 (-) 1251 WP_245108064.1 outer membrane family protein -
  MPG16_RS05110 (MPG16_05110) - 1100121..1100987 (+) 867 WP_121048776.1 DnaJ C-terminal domain-containing protein -
  MPG16_RS05115 (MPG16_05115) - 1100997..1101368 (+) 372 WP_154488947.1 helix-turn-helix transcriptional regulator -
  MPG16_RS05120 (MPG16_05120) rarA 1101365..1102540 (+) 1176 WP_245108066.1 replication-associated recombination protein A Machinery gene
  MPG16_RS05125 (MPG16_05125) fur 1102700..1103152 (+) 453 WP_000824992.1 ferric iron uptake transcriptional regulator -
  MPG16_RS05130 (MPG16_05130) - 1103172..1103669 (-) 498 WP_245108068.1 DUF2147 domain-containing protein -
  MPG16_RS05135 (MPG16_05135) - 1103666..1104202 (-) 537 WP_245108069.1 YhcH/YjgK/YiaL family protein -
  MPG16_RS05140 (MPG16_05140) fliY 1104230..1105093 (-) 864 WP_245108070.1 flagellar motor switch protein FliY -
  MPG16_RS05145 (MPG16_05145) fliM 1105097..1106161 (-) 1065 WP_050854103.1 flagellar motor switch protein FliM -
  MPG16_RS05150 (MPG16_05150) - 1106154..1106930 (-) 777 WP_220906284.1 RNA polymerase sigma factor FliA -
  MPG16_RS05155 (MPG16_05155) - 1106908..1107222 (-) 315 WP_000868000.1 hypothetical protein -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43892.53 Da        Isoelectric Point: 8.0467

>NTDB_id=576168 MPG16_RS05120 WP_245108066.1 1101365..1102540(+) (rarA) [Helicobacter pylori strain Hpfe032]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDKLCTK
ALTLLKKQIEPSAKTYLLNNSAGDARALLNLLDLSTKIEDPITLETLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDCIQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLNKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=576168 MPG16_RS05120 WP_245108066.1 1101365..1102540(+) (rarA) [Helicobacter pylori strain Hpfe032]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATCTAATAGGCAAAGACGCCCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCCCATGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATCGCTCGTATGCTAGAGCGCCCCATTCTTTTATTCAATGCGACAGATTTCAAATTAGAGGATTTACGCCTT
AAACTTAAAAATTACCAAAACACCCTTTTAAAACCGGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAACAAGAGCGATTTAGACAAGCTTTGCACTAAA
GCTTTAACATTGCTCAAAAAACAAATAGAGCCTAGCGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGATGCCAGAGC
GTTATTAAACCTTTTAGATTTGAGCACTAAGATAGAAGATCCTATCACTTTAGAAACGCTGCAATCCTTACGGCCTCATA
GCCTAAATGATGGATCTTATAGCGATGATACGCATTATAATCTTACTAGCGCTCTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTACTATCTAGCACGCTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGGTTGGTGAT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTAAATTTAGCCGCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCACGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGTTCGCCCAAGTCTAACACGGCTTAT
AGAGCGATCAATCAGGCTTTGGATTGCATTCAAAAAGGCTCACTCTACCCCATTCCTAAACACCTGCTGCCTAACGCCAA
AGATTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTAATAAGATAAGAAATTGA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)

AAA C-terminal domain (AAA_assoc_2)

(168-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

37.726

98.977

0.373