Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   KPA27_RS06760 Genome accession   NZ_CP076517
Coordinates   1350375..1351214 (-) Length   279 a.a.
NCBI ID   WP_216330744.1    Uniprot ID   -
Organism   Streptococcus suis strain 39565     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1345375..1356214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KPA27_RS06745 (KPA27_06745) - 1345659..1345832 (-) 174 Protein_1291 DUF2087 domain-containing protein -
  KPA27_RS06750 (KPA27_06750) pheT 1346032..1348431 (-) 2400 WP_216330742.1 phenylalanine--tRNA ligase subunit beta -
  KPA27_RS06755 (KPA27_06755) pheS 1349032..1350075 (-) 1044 WP_002939760.1 phenylalanine--tRNA ligase subunit alpha -
  KPA27_RS06760 (KPA27_06760) endA 1350375..1351214 (-) 840 WP_216330744.1 DNA/RNA non-specific endonuclease Machinery gene
  KPA27_RS06765 (KPA27_06765) - 1351244..1351435 (-) 192 WP_012775177.1 DNA-directed RNA polymerase subunit beta -
  KPA27_RS06770 (KPA27_06770) murA 1351428..1352711 (-) 1284 WP_216330746.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  KPA27_RS06775 (KPA27_06775) - 1352735..1352959 (-) 225 WP_216330754.1 DUF1146 family protein -
  KPA27_RS06780 (KPA27_06780) - 1353019..1353435 (-) 417 WP_002936007.1 F0F1 ATP synthase subunit epsilon -
  KPA27_RS06785 (KPA27_06785) atpD 1353445..1354851 (-) 1407 WP_216330756.1 F0F1 ATP synthase subunit beta -
  KPA27_RS06790 (KPA27_06790) - 1354871..1355749 (-) 879 WP_002936012.1 F0F1 ATP synthase subunit gamma -

Sequence

Protein


Download         Length: 279 a.a.        Molecular weight: 30163.30 Da        Isoelectric Point: 5.9478

>NTDB_id=576117 KPA27_RS06760 WP_216330744.1 1350375..1351214(-) (endA) [Streptococcus suis strain 39565]
MAKKNVKKQAMSLLSLLATIVVVAGGYLLSDNKSSNVADYSYYVNQSKASEGTPSQELASSVLTEDVKKQLGNSIEWNGA
GAFIINGNQTDLDASVASVPYGDNKTKTVQGETVPTVANALLAKSTRQYKDREETGNGRTSWTPAGWHQVHDLTGEYDHA
VDRGHLLGYALIGGLSGFDASTSNPKNIAVQTAWSNQANDQTSTGQNYFESQIRRALDKNKRVRYRVTLVYAENDDLVPV
GSHLEAKAADGSLEFNVFVPNVQSGLSINYHSGEITVNE

Nucleotide


Download         Length: 840 bp        

>NTDB_id=576117 KPA27_RS06760 WP_216330744.1 1350375..1351214(-) (endA) [Streptococcus suis strain 39565]
ATGGCGAAGAAAAATGTAAAAAAACAAGCGATGAGTCTGCTCAGCTTATTGGCTACGATTGTTGTAGTAGCGGGTGGTTA
TCTTTTAAGTGATAACAAGAGCAGTAACGTTGCTGATTATTCCTATTATGTCAATCAGTCGAAGGCAAGTGAAGGCACAC
CTAGTCAGGAACTGGCTAGTTCGGTATTGACAGAAGATGTAAAAAAACAACTGGGGAATTCGATTGAATGGAATGGTGCT
GGAGCATTTATTATTAACGGGAATCAAACGGATTTAGATGCATCGGTTGCCAGTGTTCCTTATGGTGATAATAAGACAAA
AACAGTCCAGGGAGAAACGGTTCCAACAGTAGCCAATGCGCTTTTAGCCAAATCTACACGTCAGTATAAGGACCGTGAAG
AAACAGGAAATGGTCGGACTTCTTGGACACCTGCGGGTTGGCACCAGGTCCATGATTTAACTGGAGAATATGACCATGCA
GTGGACCGTGGTCACCTCCTAGGTTATGCTTTGATTGGTGGATTGTCTGGCTTCGATGCTTCAACCAGCAATCCTAAGAA
TATTGCAGTTCAAACAGCTTGGTCCAACCAAGCTAATGACCAAACTTCAACTGGGCAGAATTATTTTGAAAGTCAGATTC
GGCGGGCCTTGGATAAAAATAAGCGTGTCCGCTATCGTGTGACCTTGGTGTATGCTGAGAATGATGACCTTGTTCCTGTC
GGAAGTCATCTAGAGGCAAAAGCAGCAGATGGTAGCCTAGAGTTCAATGTGTTCGTTCCAAATGTGCAGAGTGGTCTCAG
TATCAACTATCATAGTGGGGAAATCACGGTGAATGAATAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(81-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

70.763

84.588

0.599
  endA Streptococcus pneumoniae D39

70.763

84.588

0.599
  endA Streptococcus pneumoniae R6

70.763

84.588

0.599
  endA Streptococcus pneumoniae TIGR4

70.763

84.588

0.599