Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   JP49775_RS08190 Genome accession   NZ_AP017922
Coordinates   1661664..1662938 (+) Length   424 a.a.
NCBI ID   WP_000102740.1    Uniprot ID   -
Organism   Staphylococcus aureus strain JP02758     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1656664..1667938
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JP49775_RS08160 (JP02758_1555) mnmA 1656868..1657986 (-) 1119 WP_000066097.1 tRNA 2-thiouridine(34) synthase MnmA -
  JP49775_RS08165 (JP02758_1556) - 1657987..1659129 (-) 1143 WP_029549634.1 cysteine desulfurase family protein -
  JP49775_RS08170 (JP02758_1557) - 1659439..1660452 (+) 1014 WP_029549633.1 LLM class flavin-dependent oxidoreductase -
  JP49775_RS08175 (JP02758_1558) - 1660689..1660835 (-) 147 WP_000009238.1 SAS049 family protein -
  JP49775_RS08180 (JP02758_1559) - 1660875..1661057 (-) 183 WP_000752909.1 CsbD family protein -
  JP49775_RS08185 (JP02758_1560) cymR 1661157..1661579 (-) 423 WP_000704122.1 cysteine metabolism transcriptional regulator CymR -
  JP49775_RS08190 (JP02758_1561) rarA 1661664..1662938 (+) 1275 WP_000102740.1 replication-associated recombination protein A Machinery gene
  JP49775_RS08195 (JP02758_1562) - 1663099..1663872 (-) 774 WP_000682646.1 ThiF family adenylyltransferase -
  JP49775_RS08200 - 1663872..1664000 (-) 129 WP_014937034.1 hypothetical protein -
  JP49775_RS08210 (JP02758_1563) aspS 1664333..1666099 (-) 1767 WP_000044794.1 aspartate--tRNA ligase -
  JP49775_RS08215 (JP02758_1564) hisS 1666115..1667377 (-) 1263 WP_000590826.1 histidine--tRNA ligase -

Sequence

Protein


Download         Length: 424 a.a.        Molecular weight: 47264.84 Da        Isoelectric Point: 8.3539

>NTDB_id=57607 JP49775_RS08190 WP_000102740.1 1661664..1662938(+) (rarA) [Staphylococcus aureus strain JP02758]
MSTEPLASRMRPKNIDEIISQQHLVGPRGIIRRMVDTKKLTSMIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKD
MQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKIVLIGATTSNPYHAINPAIRSRAQIFELYPLNDEDVRQAL
TRAIEDEENGLKTYQPKIDEDAMTYFSTQSQGDVRSALNALELAVLSADNDKDGYRHVTLQDAKDCLQKGAFVSDKDGDM
HYDVMSAFQKSIRGSDVNAALHYLARLIEAGDLPTIVRRLLVISYEDIGLASPNAGQRTLAAIESAERLGLPEARIPLSQ
AVIELCLSPKSNSAMSAIDSALSDIRNGHVGQIPNHLKDGHYQGAKDLGRSIGYKYPHQYVNGYVSQQYLPDKLKNKIYY
EPKTTSKSEQQLKEIYNNLLKQRP

Nucleotide


Download         Length: 1275 bp        

>NTDB_id=57607 JP49775_RS08190 WP_000102740.1 1661664..1662938(+) (rarA) [Staphylococcus aureus strain JP02758]
GTGAGTACAGAACCATTAGCGTCGAGAATGCGCCCAAAAAATATAGATGAAATCATTTCCCAACAACACTTAGTTGGACC
AAGAGGCATTATCAGAAGAATGGTTGACACAAAAAAATTAACTTCAATGATTTTTTATGGTCCACCTGGTATAGGCAAAA
CAAGTATTGCCAAAGCAATTTCGGGCAGTACGCAATATAAATTCAGACAATTGAATGCTGTAACTAACACTAAAAAAGAT
ATGCAACTTGTTGTTGAAGAAGCTAAAATGTCTGGTCAAGTTATCTTGTTATTAGATGAAATCCATCGACTAGATAAAGC
CAAACAAGATTTTTTATTACCTCATTTAGAAAATGGCAAAATCGTCTTGATCGGTGCTACAACTTCAAATCCTTATCATG
CTATCAATCCAGCGATTCGTTCAAGAGCGCAAATTTTCGAGTTATATCCTTTAAATGACGAAGATGTGCGCCAAGCGTTA
ACTCGTGCAATAGAAGATGAAGAGAATGGTTTGAAAACATATCAACCCAAAATTGATGAAGATGCCATGACCTACTTTTC
TACACAAAGTCAAGGTGATGTTCGTAGTGCGCTAAATGCATTGGAATTAGCTGTATTAAGCGCAGATAATGACAAGGACG
GTTATCGACATGTTACATTGCAAGATGCTAAAGACTGCTTACAAAAAGGTGCATTTGTAAGTGATAAGGATGGTGACATG
CATTACGATGTTATGAGCGCTTTCCAAAAATCTATCCGTGGTAGCGACGTCAATGCCGCTTTACATTATTTAGCACGATT
AATTGAAGCTGGAGATTTACCTACAATAGTTCGACGATTACTTGTAATTAGCTATGAGGATATAGGCTTAGCCTCACCTA
ATGCTGGTCAGAGAACACTTGCTGCTATTGAATCAGCAGAACGTCTAGGTTTACCAGAAGCTAGAATCCCACTAAGCCAA
GCAGTAATCGAACTATGCTTATCACCTAAGTCAAATTCAGCAATGAGTGCCATTGATAGTGCATTGTCCGATATTAGAAA
CGGTCATGTGGGCCAAATTCCAAACCATTTAAAAGATGGACATTATCAAGGTGCTAAAGATCTAGGCCGATCTATTGGTT
ACAAATATCCACACCAATATGTTAATGGCTATGTTTCACAGCAATATTTACCTGATAAACTTAAAAACAAAATTTATTAT
GAACCAAAAACGACATCTAAAAGTGAACAACAACTCAAAGAAATATATAACAATTTACTTAAACAAAGGCCATAA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(254-418)

ATPase family associated with various cellular activities (AAA) (AAA)

(43-145)

AAA C-terminal domain (AAA_assoc_2)

(175-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

69.286

99.057

0.686

Multiple sequence alignment