Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   MPG53_RS05000 Genome accession   NZ_CP094139
Coordinates   1046895..1048070 (+) Length   391 a.a.
NCBI ID   WP_245060001.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe036     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1041895..1053070
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG53_RS04975 (MPG53_04975) - 1042157..1043053 (+) 897 WP_024115923.1 OriC activity response regulator -
  MPG53_RS04980 (MPG53_04980) - 1043277..1044143 (+) 867 WP_245061285.1 5'-3' exonuclease -
  MPG53_RS04985 (MPG53_04985) - 1044233..1045483 (-) 1251 WP_245059999.1 outer membrane family protein -
  MPG53_RS04990 (MPG53_04990) - 1045651..1046517 (+) 867 WP_096530496.1 DnaJ C-terminal domain-containing protein -
  MPG53_RS04995 (MPG53_04995) - 1046527..1046898 (+) 372 WP_000332994.1 helix-turn-helix transcriptional regulator -
  MPG53_RS05000 (MPG53_05000) rarA 1046895..1048070 (+) 1176 WP_245060001.1 replication-associated recombination protein A Machinery gene
  MPG53_RS05005 (MPG53_05005) fur 1048229..1048681 (+) 453 WP_245060003.1 ferric iron uptake transcriptional regulator -
  MPG53_RS05010 (MPG53_05010) - 1048700..1049197 (-) 498 WP_245060005.1 DUF2147 domain-containing protein -
  MPG53_RS05015 (MPG53_05015) - 1049194..1049730 (-) 537 WP_245060007.1 YhcH/YjgK/YiaL family protein -
  MPG53_RS05020 (MPG53_05020) fliY 1049759..1050622 (-) 864 WP_245060009.1 flagellar motor switch protein FliY -
  MPG53_RS05025 (MPG53_05025) fliM 1050626..1051690 (-) 1065 WP_000763605.1 flagellar motor switch protein FliM -
  MPG53_RS05030 (MPG53_05030) - 1051683..1052459 (-) 777 WP_245060011.1 RNA polymerase sigma factor FliA -
  MPG53_RS05035 (MPG53_05035) - 1052437..1052751 (-) 315 WP_000867999.1 hypothetical protein -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43993.72 Da        Isoelectric Point: 7.8110

>NTDB_id=576053 MPG53_RS05000 WP_245060001.1 1046895..1048070(+) (rarA) [Helicobacter pylori strain Hpfe036]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKIQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDKLCAK
ALTLLKKQIEPSAKTYLLNNSAGDARALLNLLDLSAKIEDPITLETLQSLRPHSPNDGSYSDDMHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVVFASEDIGNANPNALNLAASCLFSVKQIGYPEVRIILSQCVIYLACSPKSNTAY
RAINQALDYIQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVFSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=576053 MPG53_RS05000 WP_245060001.1 1046895..1048070(+) (rarA) [Helicobacter pylori strain Hpfe036]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATCTAATAGGCAAAGACGCCCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCCCATGCTTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATCGCCCGCATGCTAGAGCGCCCCATTCTTTTATTCAATGCGACGGATTTCAAATTAGAGGATTTGCGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCCGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAATCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCTTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAACAAGAGCGATTTAGACAAGCTTTGCGCTAAA
GCTTTAACATTACTCAAAAAACAAATAGAGCCTAGCGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGATGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAGATCCTATCACTTTAGAAACGCTGCAATCCTTACGGCCTCATA
GCCCAAATGACGGATCTTATAGCGATGATATGCATTATAATCTTACTAGCGCTCTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTATTATCTGGCGCGCTTGATTGCTGGCGGGGAAAACCCAGAATTTATCGCCAGAAGGCTGGTGGT
TTTTGCGAGCGAAGATATTGGTAACGCTAATCCGAACGCCCTTAATTTAGCCGCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGTGCGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGTTCGCCCAAGTCTAACACGGCCTAT
AGAGCGATCAACCAGGCTTTGGATTATATTCAAAAAGGCTCACTCTACCCCATTCCTAAACACTTGCTGCCTAACGCTAA
AGACTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTTTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)

AAA C-terminal domain (AAA_assoc_2)

(168-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

37.984

98.977

0.376