Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   KPF79_RS07345 Genome accession   NZ_CP076513
Coordinates   1384418..1384933 (-) Length   171 a.a.
NCBI ID   WP_002783936.1    Uniprot ID   A0A5T1ZSK1
Organism   Campylobacter coli strain R19.1157     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1379418..1389933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KPF79_RS07330 (KPF79_07330) - 1379530..1381347 (-) 1818 WP_216124579.1 motility associated factor glycosyltransferase family protein -
  KPF79_RS07335 (KPF79_07335) - 1381344..1383167 (-) 1824 WP_216124581.1 motility associated factor glycosyltransferase family protein -
  KPF79_RS07340 (KPF79_07340) - 1383177..1384418 (-) 1242 WP_060785289.1 DUF2920 family protein -
  KPF79_RS07345 (KPF79_07345) ctsG 1384418..1384933 (-) 516 WP_002783936.1 type II secretion system protein Machinery gene
  KPF79_RS07350 (KPF79_07350) tsaD 1384937..1385944 (-) 1008 WP_002777752.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  KPF79_RS07355 (KPF79_07355) - 1385941..1387335 (-) 1395 WP_002793756.1 M99 family carboxypeptidase catalytic domain-containing protein -
  KPF79_RS07360 (KPF79_07360) dxr 1387332..1388408 (-) 1077 WP_002799194.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  KPF79_RS07365 (KPF79_07365) - 1388405..1389130 (-) 726 WP_052778193.1 phosphatidate cytidylyltransferase -
  KPF79_RS07370 (KPF79_07370) - 1389139..1389477 (-) 339 WP_002777761.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18969.97 Da        Isoelectric Point: 8.4861

>NTDB_id=575983 KPF79_RS07345 WP_002783936.1 1384418..1384933(-) (ctsG) [Campylobacter coli strain R19.1157]
MKRAFTILELVFVIVILGILAAIALPKFSSSRDEAEVSKSLNNLKTLINDISIYALKNSHLSTMNFMSNVSGVENVDLNN
FIGIKEVNFRVGEDKECIKLIFIDRNDFVLMGISSNEASKNAIINIANNPKQEFQNLDFTSNSKNKACVALSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=575983 KPF79_RS07345 WP_002783936.1 1384418..1384933(-) (ctsG) [Campylobacter coli strain R19.1157]
GTGAAAAGAGCTTTTACTATATTAGAACTTGTTTTTGTTATCGTGATTTTAGGAATTTTAGCAGCGATTGCTTTGCCAAA
ATTCAGTTCTAGTAGAGATGAAGCTGAAGTGAGTAAATCCTTAAACAATCTTAAAACTTTAATCAATGATATAAGCATCT
ATGCCTTAAAAAATAGTCATTTAAGCACTATGAATTTTATGAGCAATGTAAGTGGAGTAGAAAATGTCGATCTTAACAAT
TTTATAGGCATAAAAGAAGTAAATTTTAGGGTCGGAGAGGATAAAGAGTGTATAAAACTGATTTTCATCGATAGAAATGA
TTTTGTACTGATGGGAATTTCTAGTAATGAAGCAAGCAAAAATGCCATAATCAATATAGCCAATAACCCCAAACAAGAAT
TTCAAAACTTAGATTTTACAAGCAATTCAAAAAATAAAGCTTGCGTGGCACTAAGTAAAAATGAGAATTTTAAAAATTTA
GCCAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5T1ZSK1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

77.778

100

0.778