Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   MPG28_RS04980 Genome accession   NZ_CP094135
Coordinates   1044370..1045545 (+) Length   391 a.a.
NCBI ID   WP_245077519.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe040     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1039370..1050545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG28_RS04955 (MPG28_04955) - 1039630..1040526 (+) 897 WP_000697547.1 OriC activity response regulator -
  MPG28_RS04960 (MPG28_04960) - 1040752..1041618 (+) 867 WP_245079258.1 5'-3' exonuclease -
  MPG28_RS04965 (MPG28_04965) - 1041708..1042958 (-) 1251 WP_180674725.1 hypothetical protein -
  MPG28_RS04970 (MPG28_04970) - 1043126..1043992 (+) 867 WP_180394143.1 DnaJ C-terminal domain-containing protein -
  MPG28_RS04975 (MPG28_04975) - 1044002..1044373 (+) 372 WP_000272467.1 helix-turn-helix transcriptional regulator -
  MPG28_RS04980 (MPG28_04980) rarA 1044370..1045545 (+) 1176 WP_245077519.1 replication-associated recombination protein A Machinery gene
  MPG28_RS04985 (MPG28_04985) fur 1045705..1046157 (+) 453 WP_000824992.1 ferric iron uptake transcriptional regulator -
  MPG28_RS04990 (MPG28_04990) - 1046177..1046674 (-) 498 WP_000780271.1 DUF2147 domain-containing protein -
  MPG28_RS04995 (MPG28_04995) - 1046671..1047207 (-) 537 WP_245077521.1 YhcH/YjgK/YiaL family protein -
  MPG28_RS05000 (MPG28_05000) fliY 1047235..1048098 (-) 864 WP_245077523.1 flagellar motor switch protein FliY -
  MPG28_RS05005 (MPG28_05005) fliM 1048102..1049166 (-) 1065 WP_033123133.1 flagellar motor switch protein FliM -
  MPG28_RS05010 (MPG28_05010) - 1049159..1049935 (-) 777 WP_000602378.1 RNA polymerase sigma factor FliA -
  MPG28_RS05015 (MPG28_05015) - 1049913..1050227 (-) 315 WP_000867999.1 hypothetical protein -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43923.57 Da        Isoelectric Point: 8.1219

>NTDB_id=575894 MPG28_RS04980 WP_245077519.1 1044370..1045545(+) (rarA) [Helicobacter pylori strain Hpfe040]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLKKSDLDKLCAK
ALTLLKKQIEPSAKTYLLNNSAGDARALLNLLDLSAKVEDPITLETLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLATSCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDYIQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=575894 MPG28_RS04980 WP_245077519.1 1044370..1045545(+) (rarA) [Helicobacter pylori strain Hpfe040]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATCTAATAGGCAAAGACGCCCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCCCACGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATCGCCCGCATGCTAGAGCGCCCCATTCTTTTATTCAATGCGACGGATTTCAAATTAGAGGATTTACGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCGGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACTCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATTTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GTCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAAAAAAAGCGATTTAGACAAGCTTTGCGCTAAA
GCTTTAACATTACTCAAAAAACAAATAGAGCCTAGTGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGATGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAGTAGAAGATCCTATCACTTTAGAAACACTGCAATCCTTACGGCCTCATA
GCCTAAATGACGGATCTTATAGCGATGATACGCATTATAATCTTACCAGCGCTCTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTATTATCTGGCACGCTTGATTGCTGGTGGGGAAAACCCAGAATTTATCGCCAGAAGGCTGGTGAT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTAAATTTAGCCACTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGTTCGCCCAAGTCTAACACGGCTTAT
AGAGCGATCAATCAGGCTTTGGATTATATTCAAAAAGGCTCACTCTACCCCATTCCTAAACACCTGCTGCCTAACGCTAA
AGACTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)

AAA C-terminal domain (AAA_assoc_2)

(168-237)

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

37.136

100

0.391