Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   MPG50_RS06980 Genome accession   NZ_CP094134
Coordinates   1461203..1461487 (-) Length   94 a.a.
NCBI ID   WP_000736478.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe048     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1456203..1466487
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG50_RS06955 (MPG50_06955) - 1456807..1457976 (-) 1170 WP_180519005.1 VirB8/TrbF family protein -
  MPG50_RS06960 (MPG50_06960) - 1457969..1458103 (-) 135 WP_000738749.1 hypothetical protein -
  MPG50_RS06965 (MPG50_06965) comB4 1458100..1460682 (-) 2583 WP_245032044.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPG50_RS06970 (MPG50_06970) - 1460682..1460918 (-) 237 WP_001183709.1 hypothetical protein -
  MPG50_RS06975 (MPG50_06975) comB3 1460929..1461192 (-) 264 WP_001177712.1 hypothetical protein Machinery gene
  MPG50_RS06980 (MPG50_06980) comB2 1461203..1461487 (-) 285 WP_000736478.1 TrbC/VirB2 family protein Machinery gene
  MPG50_RS06985 (MPG50_06985) - 1461484..1461963 (-) 480 WP_000571125.1 hypothetical protein -
  MPG50_RS06990 (MPG50_06990) - 1462067..1462855 (-) 789 WP_245032046.1 integrase -
  MPG50_RS06995 (MPG50_06995) - 1463017..1463109 (+) 93 Protein_1366 outer membrane beta-barrel protein -
  MPG50_RS07000 (MPG50_07000) - 1463251..1463979 (-) 729 WP_000395285.1 TerC family protein -
  MPG50_RS07005 (MPG50_07005) corA 1463986..1464948 (-) 963 WP_000248529.1 magnesium/cobalt transporter CorA -
  MPG50_RS07010 (MPG50_07010) - 1464964..1466172 (-) 1209 WP_245032048.1 phosphoglycerate kinase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10683.00 Da        Isoelectric Point: 10.9123

>NTDB_id=575866 MPG50_RS06980 WP_000736478.1 1461203..1461487(-) (comB2) [Helicobacter pylori strain Hpfe048]
MKKLSHFRKLIAFLGFSPLLLQADMTTFFNSIEQQLTSPTAKGILMVIFLGLAIFIWKNLDRWKEILMTVLAIAIGAAIF
FKAPALANWFMSIF

Nucleotide


Download         Length: 285 bp        

>NTDB_id=575866 MPG50_RS06980 WP_000736478.1 1461203..1461487(-) (comB2) [Helicobacter pylori strain Hpfe048]
ATGAAAAAATTAAGTCATTTTAGAAAGCTCATCGCCTTTTTGGGTTTTTCACCACTTTTACTACAAGCGGATATGACTAC
CTTTTTTAATAGTATTGAACAACAACTCACTAGCCCCACCGCTAAGGGTATTTTGATGGTCATTTTTTTAGGGCTTGCTA
TTTTTATATGGAAAAATTTAGACAGATGGAAAGAAATCTTAATGACAGTCCTTGCTATTGCCATAGGCGCTGCAATCTTT
TTTAAAGCCCCAGCCTTAGCTAATTGGTTTATGAGTATTTTTTAA

Domains

Predicted by InterProScan.

TrbC/VIRB2 pilin (TrbC)

(4-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

57.143

96.809

0.553