Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   KPG50_RS07295 Genome accession   NZ_CP076504
Coordinates   1408133..1408648 (-) Length   171 a.a.
NCBI ID   WP_216177293.1    Uniprot ID   -
Organism   Campylobacter jejuni strain R18.1301     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1403133..1413648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KPG50_RS07280 (KPG50_07280) - 1403242..1405062 (-) 1821 WP_052794584.1 motility associated factor glycosyltransferase family protein -
  KPG50_RS07285 (KPG50_07285) - 1405059..1406882 (-) 1824 WP_216177288.1 motility associated factor glycosyltransferase family protein -
  KPG50_RS07290 (KPG50_07290) - 1406892..1408133 (-) 1242 WP_216177291.1 DUF2920 family protein -
  KPG50_RS07295 (KPG50_07295) ctsG 1408133..1408648 (-) 516 WP_216177293.1 type II secretion system protein Machinery gene
  KPG50_RS07300 (KPG50_07300) tsaD 1408649..1409656 (-) 1008 WP_216177296.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  KPG50_RS07305 (KPG50_07305) - 1409653..1411047 (-) 1395 WP_002860793.1 M99 family carboxypeptidase catalytic domain-containing protein -
  KPG50_RS07310 (KPG50_07310) dxr 1411049..1412119 (-) 1071 WP_002860792.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  KPG50_RS07315 (KPG50_07315) cdsA 1412116..1412841 (-) 726 WP_216177299.1 phosphatidate cytidylyltransferase -
  KPG50_RS07320 (KPG50_07320) - 1412850..1413188 (-) 339 WP_002852397.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18723.58 Da        Isoelectric Point: 5.7789

>NTDB_id=575856 KPG50_RS07295 WP_216177293.1 1408133..1408648(-) (ctsG) [Campylobacter jejuni strain R18.1301]
MRKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKMMSNVSGVENVDLGN
FNGTKEVNFRVGDDKECLKLVFIDRADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=575856 KPG50_RS07295 WP_216177293.1 1408133..1408648(-) (ctsG) [Campylobacter jejuni strain R18.1301]
ATGAGAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATCGTTATTTTGGGAATTTTAGCCGCTATTGCTTTGCCAAA
AATGAGTTCAAGTAAGGATGAAGCTGAAGTTAGCAAGTCTTTAAACAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAATGATGAGTAATGTAAGTGGGGTTGAAAATGTCGATCTTGGCAAT
TTCAATGGCACAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAGATAGAGCGGA
TTTTATACTCATGGGAATTTCAAGTAATGAAGCAAGCAAAAATGCTATCATCAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGCAATAAAGCTTGTGTGATCTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCAAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

92.982

100

0.93