Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   MPG21_RS05975 Genome accession   NZ_CP094133
Coordinates   1248525..1248785 (+) Length   86 a.a.
NCBI ID   WP_245025040.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe049     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1243525..1253785
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG21_RS05950 (MPG21_05950) - 1243700..1244071 (+) 372 WP_245025034.1 c-type cytochrome -
  MPG21_RS05955 (MPG21_05955) hcpE 1244166..1245233 (+) 1068 WP_245025035.1 SEL1-like repeat protein -
  MPG21_RS05960 (MPG21_05960) - 1245564..1246328 (+) 765 WP_245025036.1 hypothetical protein -
  MPG21_RS05965 (MPG21_05965) - 1246339..1248232 (+) 1894 Protein_1170 toprim domain-containing protein -
  MPG21_RS05970 (MPG21_05970) - 1248222..1248524 (+) 303 WP_245025038.1 TrbC/VirB2 family protein -
  MPG21_RS05975 (MPG21_05975) comB3 1248525..1248785 (+) 261 WP_245025040.1 virB3 type IV secretion protein Machinery gene
  MPG21_RS05980 (MPG21_05980) - 1248798..1251295 (+) 2498 Protein_1173 VirB4 family type IV secretion system protein -
  MPG21_RS05985 (MPG21_05985) - 1251288..1253222 (+) 1935 WP_245026085.1 type IA DNA topoisomerase -
  MPG21_RS07795 - 1253222..1253350 (+) 129 WP_001185489.1 hypothetical protein -

Sequence

Protein


Download         Length: 86 a.a.        Molecular weight: 10182.05 Da        Isoelectric Point: 4.6082

>NTDB_id=575819 MPG21_RS05975 WP_245025040.1 1248525..1248785(+) (comB3) [Helicobacter pylori strain Hpfe049]
MILNYVETINVREISKKEKFLKLNMNSWIISFLSASFLFVWSLLYGVVLLVALITMFYILEFFDEDITNIILANLTLKND
TREYYA

Nucleotide


Download         Length: 261 bp        

>NTDB_id=575819 MPG21_RS05975 WP_245025040.1 1248525..1248785(+) (comB3) [Helicobacter pylori strain Hpfe049]
ATGATTTTAAATTATGTAGAGACCATCAATGTTAGAGAAATATCTAAAAAAGAGAAGTTTTTAAAGCTTAATATGAATAG
TTGGATCATTTCTTTTTTGAGCGCTTCTTTCTTATTTGTGTGGTCTTTATTATATGGCGTGGTGCTATTGGTGGCATTAA
TAACAATGTTTTACATACTAGAATTTTTTGATGAAGATATTACAAACATTATTTTGGCAAACCTAACGCTAAAAAATGAC
ACTAGAGAATATTATGCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

43.678

100

0.442