Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   MPG21_RS05035 Genome accession   NZ_CP094133
Coordinates   1061413..1062588 (+) Length   391 a.a.
NCBI ID   WP_245024858.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe049     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1056413..1067588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG21_RS05010 (MPG21_05010) - 1056701..1057597 (+) 897 WP_000697547.1 OriC activity response regulator -
  MPG21_RS05015 (MPG21_05015) - 1057821..1058687 (+) 867 WP_245026069.1 5'-3' exonuclease -
  MPG21_RS05020 (MPG21_05020) - 1058751..1060001 (-) 1251 WP_245024856.1 outer membrane family protein -
  MPG21_RS05025 (MPG21_05025) - 1060169..1061035 (+) 867 WP_245024857.1 DnaJ C-terminal domain-containing protein -
  MPG21_RS05030 (MPG21_05030) - 1061045..1061416 (+) 372 WP_000332994.1 helix-turn-helix transcriptional regulator -
  MPG21_RS05035 (MPG21_05035) rarA 1061413..1062588 (+) 1176 WP_245024858.1 replication-associated recombination protein A Machinery gene
  MPG21_RS05040 (MPG21_05040) fur 1062748..1063200 (+) 453 WP_180519474.1 ferric iron uptake transcriptional regulator -
  MPG21_RS05045 (MPG21_05045) - 1063220..1063717 (-) 498 WP_245024859.1 DUF2147 domain-containing protein -
  MPG21_RS05050 (MPG21_05050) - 1063714..1064250 (-) 537 WP_245024860.1 YhcH/YjgK/YiaL family protein -
  MPG21_RS05055 (MPG21_05055) fliY 1064279..1065142 (-) 864 WP_245024861.1 flagellar motor switch protein FliY -
  MPG21_RS05060 (MPG21_05060) fliM 1065146..1066210 (-) 1065 WP_001919332.1 flagellar motor switch protein FliM -
  MPG21_RS05065 (MPG21_05065) - 1066203..1066979 (-) 777 WP_120928552.1 RNA polymerase sigma factor FliA -
  MPG21_RS05070 (MPG21_05070) - 1066957..1067271 (-) 315 WP_000867999.1 hypothetical protein -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43886.66 Da        Isoelectric Point: 8.2999

>NTDB_id=575811 MPG21_RS05035 WP_245024858.1 1061413..1062588(+) (rarA) [Helicobacter pylori strain Hpfe049]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLIHAIRSRSFIFELTPLNKSDLDKLCAK
ALTLLKKQIEPDAKTYLLNNSAGDARALLNLLDLSAKIEDPITLKTLKSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDCIQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=575811 MPG21_RS05035 WP_245024858.1 1061413..1062588(+) (rarA) [Helicobacter pylori strain Hpfe049]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATCTAATAGGCAAAGACGCCCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCCCATGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATCGCCCGCATGCTAGAGCGCCCCATTCTTTTATTCAATGCGACAGATTTCAAATTAGAAGATTTACGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCGGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
TCCATGCAATCCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAACAAGAGCGATTTAGACAAGCTTTGCGCTAAA
GCTTTAACATTGCTCAAAAAACAAATAGAGCCTGACGCTAAAACTTATCTTTTAAACAACAGCGCCGGCGATGCCAGAGC
GTTATTAAATCTCTTAGATTTGAGCGCTAAAATAGAAGATCCTATCACTTTAAAAACGCTCAAATCCTTACGGCCCCATA
GCCTAAATGATGGATCTTATAGCGATGATACGCATTATAACCTTACTAGCGCTCTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTATTATCTGGCGCGCTTGATTGCTGGTGGGGAAAACCCAGAATTTATCGCCAGAAGGTTGGTGAT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTTAATTTAGCCGCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCACGCATCATTTTAAGCCAATGCGTGATTTATCTGGCCTGTTCGCCCAAGTCTAACACGGCCTAT
AGAGCGATCAACCAGGCTTTGGATTGTATTCAAAAAGGCTCACTCTACCCCATTCCTAAACACCTGCTGCCTAACGCTAA
AGACTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)

AAA C-terminal domain (AAA_assoc_2)

(168-237)

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

36.893

100

0.389