Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   MPG57_RS05035 Genome accession   NZ_CP094132
Coordinates   1055626..1056801 (+) Length   391 a.a.
NCBI ID   WP_245080472.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe051     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1050626..1061801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG57_RS05010 (MPG57_05010) - 1050954..1051850 (+) 897 WP_245080467.1 response regulator -
  MPG57_RS05015 (MPG57_05015) - 1052076..1052942 (+) 867 WP_245081823.1 5'-3' exonuclease -
  MPG57_RS05020 (MPG57_05020) - 1052964..1054214 (-) 1251 WP_245080468.1 outer membrane family protein -
  MPG57_RS05025 (MPG57_05025) - 1054382..1055248 (+) 867 WP_245080470.1 DnaJ C-terminal domain-containing protein -
  MPG57_RS05030 (MPG57_05030) - 1055258..1055629 (+) 372 WP_000332994.1 helix-turn-helix transcriptional regulator -
  MPG57_RS05035 (MPG57_05035) rarA 1055626..1056801 (+) 1176 WP_245080472.1 replication-associated recombination protein A Machinery gene
  MPG57_RS05040 (MPG57_05040) fur 1056961..1057410 (+) 450 WP_033122395.1 ferric iron uptake transcriptional regulator -
  MPG57_RS05045 (MPG57_05045) - 1057418..1057915 (-) 498 WP_000780271.1 DUF2147 domain-containing protein -
  MPG57_RS05050 (MPG57_05050) - 1057912..1058448 (-) 537 WP_129066015.1 YhcH/YjgK/YiaL family protein -
  MPG57_RS05055 (MPG57_05055) fliY 1058476..1059339 (-) 864 WP_245080474.1 flagellar motor switch protein FliY -
  MPG57_RS05060 (MPG57_05060) fliM 1059343..1060407 (-) 1065 WP_000763605.1 flagellar motor switch protein FliM -
  MPG57_RS05065 (MPG57_05065) - 1060400..1061176 (-) 777 WP_000602378.1 RNA polymerase sigma factor FliA -
  MPG57_RS05070 (MPG57_05070) - 1061154..1061468 (-) 315 WP_000867999.1 hypothetical protein -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43895.52 Da        Isoelectric Point: 8.1219

>NTDB_id=575770 MPG57_RS05035 WP_245080472.1 1055626..1056801(+) (rarA) [Helicobacter pylori strain Hpfe051]
MSLTSLLNPKSLEDFLGQEHLIGKDATLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLKKSDLDKLCAK
ALTLLKKQIEPSAKTYLLNNSAGDARALLNLLDLSAKIEDPITLETLQSLRPHSPNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDYIQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=575770 MPG57_RS05035 WP_245080472.1 1055626..1056801(+) (rarA) [Helicobacter pylori strain Hpfe051]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATCTAATAGGGAAAGACGCCAC
TTTATTTAAAGCCCTACAATCCAAACACTTCCCCCATGCCTTTTTCTATGGCCCTCCTGGCGTAGGTAAAACAAGCCTGG
CTCAAATCATCGCCCGCATGCTAGAGCGCCCCATTCTTTTATTCAATGCGACAGATTTCAAATTAGAGGATTTGCGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCCGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCTTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAAAAAGAGCGATTTAGACAAGCTTTGCGCTAAA
GCTTTAACATTGCTCAAAAAACAAATAGAGCCTAGCGCTAAAACCTATCTTTTAAACAACAGTGCTGGCGATGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAGATCCTATCACTTTAGAAACGCTGCAATCCTTACGGCCTCATA
GCCCAAATGACGGATCTTATAGCGATGATACGCATTATAATCTTACTAGCGCTCTAATCAAGTCTTTAAGGGGGAGCGAT
GAAAACGCTTCCATCTACTATCTAGCGCGCTTGATTGCTGGTGGGGAAAACCCGGAATTTATCGCCAGAAGGCTAGTGAT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTAAATTTAGCCGCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGTTACCCTGAAGCACGCATCATTTTAAGCCAATGCGTGATTTATCTGGCCTGTTCGCCCAAGTCTAACACGGCCTAT
AGAGCGATCAATCAGGCTTTGGATTATATTCAAAAAGGCTCACTCTACCCCATTCCTAAACACCTGCTGCCTAACGCTAA
AGACTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAAATAAGAAATTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)

AAA C-terminal domain (AAA_assoc_2)

(168-237)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

37.136

100

0.391