Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   MPG30_RS04950 Genome accession   NZ_CP094131
Coordinates   1049151..1050326 (+) Length   391 a.a.
NCBI ID   WP_180436071.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe052     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1044151..1055326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG30_RS04925 (MPG30_04925) - 1044479..1045375 (+) 897 WP_000697547.1 OriC activity response regulator -
  MPG30_RS04930 (MPG30_04930) - 1045601..1046467 (+) 867 WP_080127562.1 5'-3' exonuclease -
  MPG30_RS04935 (MPG30_04935) - 1046489..1047739 (-) 1251 WP_245047189.1 outer membrane family protein -
  MPG30_RS04940 (MPG30_04940) - 1047907..1048773 (+) 867 WP_120800358.1 DnaJ C-terminal domain-containing protein -
  MPG30_RS04945 (MPG30_04945) - 1048783..1049154 (+) 372 WP_000332994.1 helix-turn-helix transcriptional regulator -
  MPG30_RS04950 (MPG30_04950) rarA 1049151..1050326 (+) 1176 WP_180436071.1 replication-associated recombination protein A Machinery gene
  MPG30_RS04955 (MPG30_04955) fur 1050486..1050938 (+) 453 WP_000824985.1 ferric iron uptake transcriptional regulator -
  MPG30_RS04960 (MPG30_04960) - 1050958..1051455 (-) 498 WP_245047191.1 DUF2147 domain-containing protein -
  MPG30_RS04965 (MPG30_04965) - 1051452..1051988 (-) 537 WP_245047193.1 YhcH/YjgK/YiaL family protein -
  MPG30_RS04970 (MPG30_04970) fliY 1052017..1052880 (-) 864 WP_245047195.1 flagellar motor switch protein FliY -
  MPG30_RS04975 (MPG30_04975) fliM 1052884..1053948 (-) 1065 WP_000763605.1 flagellar motor switch protein FliM -
  MPG30_RS04980 (MPG30_04980) - 1053941..1054717 (-) 777 WP_001916890.1 RNA polymerase sigma factor FliA -
  MPG30_RS04985 (MPG30_04985) - 1054695..1055009 (-) 315 WP_000867999.1 hypothetical protein -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43923.57 Da        Isoelectric Point: 8.1219

>NTDB_id=575731 MPG30_RS04950 WP_180436071.1 1049151..1050326(+) (rarA) [Helicobacter pylori strain Hpfe052]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLKKSDLDKLCAK
ALTLLKKQIEPSAKTYLLNNSAGDARALLNLLDLSAKIEDPITLETLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVVFASEDIGNANPNALNLATSCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDYIQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=575731 MPG30_RS04950 WP_180436071.1 1049151..1050326(+) (rarA) [Helicobacter pylori strain Hpfe052]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATCTAATAGGCAAAGACGCCCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCTCATGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATCGCCCGCATGCTAGAGCGCCCCATTCTTTTATTTAATGCGACGGATTTCAAATTAGAGGATTTACGCCTT
AAACTTAAAAATTACCAAAACACCCTTTTAAAACCCGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCCAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAAAAAGAGCGATTTAGACAAACTTTGTGCTAAA
GCTTTAACATTACTCAAAAAACAAATAGAGCCTAGCGCTAAAACCTATCTTTTGAACAACAGCGCTGGCGATGCCAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAGATCCTATCACTTTAGAAACACTGCAATCCTTACGGCCTCATA
GCCTAAATGACGGATCTTATAGCGATGATACGCATTATAATCTTACTAGCGCATTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTATTATCTGGCGCGTTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGGCTGGTGGT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTAAATTTAGCCACTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGTTCGCCCAAGTCTAACACGGCTTAT
AGAGCGATCAACCAGGCTTTGGATTATATTCAAAAAGGCTCACTCTACCCCATTCCTAAACACCTACTACCTAACGCTAA
AGACTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(168-237)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

37.379

100

0.394