Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   MPF99_RS06055 Genome accession   NZ_CP094130
Coordinates   1236605..1237780 (-) Length   391 a.a.
NCBI ID   WP_245058530.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe053     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1231605..1242780
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF99_RS06020 (MPF99_06020) - 1231932..1232246 (+) 315 WP_000867999.1 hypothetical protein -
  MPF99_RS06025 (MPF99_06025) - 1232224..1232991 (+) 768 WP_245058527.1 RNA polymerase sigma factor FliA -
  MPF99_RS06030 (MPF99_06030) fliM 1232984..1234048 (+) 1065 WP_000763605.1 flagellar motor switch protein FliM -
  MPF99_RS06035 (MPF99_06035) fliY 1234052..1234915 (+) 864 WP_245058528.1 flagellar motor switch protein FliY -
  MPF99_RS06040 (MPF99_06040) - 1234943..1235479 (+) 537 WP_000963998.1 YhcH/YjgK/YiaL family protein -
  MPF99_RS06045 (MPF99_06045) - 1235476..1235973 (+) 498 WP_245058529.1 DUF2147 domain-containing protein -
  MPF99_RS06050 (MPF99_06050) fur 1235993..1236445 (-) 453 WP_024117933.1 ferric iron uptake transcriptional regulator -
  MPF99_RS06055 (MPF99_06055) rarA 1236605..1237780 (-) 1176 WP_245058530.1 replication-associated recombination protein A Machinery gene
  MPF99_RS06060 (MPF99_06060) - 1237777..1238148 (-) 372 WP_000333004.1 helix-turn-helix transcriptional regulator -
  MPF99_RS06065 (MPF99_06065) - 1238158..1239024 (-) 867 WP_000045787.1 DnaJ C-terminal domain-containing protein -
  MPF99_RS06070 (MPF99_06070) - 1239192..1240442 (+) 1251 WP_245058531.1 outer membrane family protein -
  MPF99_RS06075 (MPF99_06075) - 1240506..1241372 (-) 867 WP_245059589.1 5'-3' exonuclease -
  MPF99_RS06080 (MPF99_06080) - 1241598..1242494 (-) 897 WP_000697547.1 OriC activity response regulator -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43979.68 Da        Isoelectric Point: 8.1219

>NTDB_id=575704 MPF99_RS06055 WP_245058530.1 1236605..1237780(-) (rarA) [Helicobacter pylori strain Hpfe053]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLTQIIARMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLKKSDLDKLCIK
ALTLLKKQIEPSAKTYLLNNSAGDARALLNLLDLSAKIEDPITLETLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDYIQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=575704 MPF99_RS06055 WP_245058530.1 1236605..1237780(-) (rarA) [Helicobacter pylori strain Hpfe053]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATCTAATAGGCAAAGACGCCCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCCCACGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGA
CTCAAATCATCGCCCGCATGCTAGAGCGCCCCATTCTTTTATTCAATGCGACAGATTTCAAATTAGAGGATTTACGCCTT
AAACTTAAAAATTACCAAAACACCCTTTTAAAACCGGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAAAAAGAGCGATTTAGACAAGCTTTGTATTAAA
GCTTTAACTTTGCTCAAAAAACAAATAGAGCCTAGCGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGATGCCAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAGATCCTATCACTTTAGAAACGCTGCAATCCTTACGGCCTCATA
GCTTGAATGACGGATCTTATAGCGATGATACGCATTATAACCTTACTAGCGCTCTAATCAAGTCTTTAAGGGGGAGCGAT
GAAAACGCTTCCATCTATTATCTAGCGCGCTTGATTGCTGGCGGGGAAAATCCGGAATTTATCGCCAGAAGGCTGGTGAT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTAAATTTAGCCGCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGTTCGCCCAAGTCTAACACGGCTTAT
AGAGCGATCAATCAGGCTTTGGATTATATTCAAAAAGGCTCACTCTACCCCATTCCTAAGCACCTATTGCCTAACGCTAA
AGACTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)

AAA C-terminal domain (AAA_assoc_2)

(168-237)

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

37.136

100

0.391