Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   MPG85_RS07055 Genome accession   NZ_CP094129
Coordinates   1468189..1468452 (-) Length   87 a.a.
NCBI ID   WP_000584971.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe054     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1463189..1473452
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG85_RS07040 (MPG85_07040) - 1464162..1465592 (-) 1431 WP_180416419.1 COG3014 family protein -
  MPG85_RS07050 (MPG85_07050) comB4 1465824..1468187 (-) 2364 WP_245050553.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPG85_RS07055 (MPG85_07055) comB3 1468189..1468452 (-) 264 WP_000584971.1 hypothetical protein Machinery gene
  MPG85_RS07060 (MPG85_07060) comB2 1468452..1468733 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  MPG85_RS07065 (MPG85_07065) - 1468878..1469705 (-) 828 WP_245050555.1 DUF5718 family protein -
  MPG85_RS07070 (MPG85_07070) - 1469797..1470849 (-) 1053 WP_220943493.1 MnmA/TRMU family protein -
  MPG85_RS07075 (MPG85_07075) dnaG 1470846..1472525 (-) 1680 WP_245050557.1 DNA primase -
  MPG85_RS07080 (MPG85_07080) groES 1472799..1473155 (+) 357 WP_212778432.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10076.17 Da        Isoelectric Point: 9.5507

>NTDB_id=575666 MPG85_RS07055 WP_000584971.1 1468189..1468452(-) (comB3) [Helicobacter pylori strain Hpfe054]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFVPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIARSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=575666 MPG85_RS07055 WP_000584971.1 1468189..1468452(-) (comB3) [Helicobacter pylori strain Hpfe054]
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGTGCCTTTTATTTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCTAGAAGTAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

96.552

100

0.966