Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   MPG85_RS05000 Genome accession   NZ_CP094129
Coordinates   1046497..1047672 (+) Length   391 a.a.
NCBI ID   WP_245050174.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe054     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1041497..1052672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG85_RS04975 (MPG85_04975) - 1041824..1042720 (+) 897 WP_245050172.1 response regulator -
  MPG85_RS04980 (MPG85_04980) - 1043036..1043813 (+) 778 Protein_966 5'-3' exonuclease -
  MPG85_RS04985 (MPG85_04985) - 1043835..1045085 (-) 1251 WP_245050173.1 outer membrane family protein -
  MPG85_RS04990 (MPG85_04990) - 1045253..1046119 (+) 867 WP_154427494.1 DnaJ C-terminal domain-containing protein -
  MPG85_RS04995 (MPG85_04995) - 1046129..1046500 (+) 372 WP_039704360.1 helix-turn-helix transcriptional regulator -
  MPG85_RS05000 (MPG85_05000) rarA 1046497..1047672 (+) 1176 WP_245050174.1 replication-associated recombination protein A Machinery gene
  MPG85_RS05005 (MPG85_05005) fur 1047832..1048284 (+) 453 WP_000824985.1 ferric iron uptake transcriptional regulator -
  MPG85_RS05010 (MPG85_05010) - 1048304..1048801 (-) 498 WP_000780291.1 DUF2147 domain-containing protein -
  MPG85_RS05015 (MPG85_05015) - 1048798..1049334 (-) 537 WP_245050175.1 YhcH/YjgK/YiaL family protein -
  MPG85_RS05020 (MPG85_05020) fliY 1049363..1050226 (-) 864 WP_245050176.1 flagellar motor switch protein FliY -
  MPG85_RS05025 (MPG85_05025) fliM 1050230..1051294 (-) 1065 WP_000763605.1 flagellar motor switch protein FliM -
  MPG85_RS05030 (MPG85_05030) - 1051287..1052063 (-) 777 WP_000602378.1 RNA polymerase sigma factor FliA -
  MPG85_RS05035 (MPG85_05035) - 1052041..1052355 (-) 315 WP_000867999.1 hypothetical protein -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43935.58 Da        Isoelectric Point: 7.8110

>NTDB_id=575651 MPG85_RS05000 WP_245050174.1 1046497..1047672(+) (rarA) [Helicobacter pylori strain Hpfe054]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHTFFYGPPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELAPLNKSDLDKLCTK
ALTLLKKQIEPSAKTYLLNNSAGDARALLNLLDLSAKIEDPITLETLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVVFASEDIGNANPNALNLAASCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDYIQKGLLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=575651 MPG85_RS05000 WP_245050174.1 1046497..1047672(+) (rarA) [Helicobacter pylori strain Hpfe054]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATCTAATAGGCAAAGACGCCCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCCCATACCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATCGCCCGCATGCTGGAGCGCCCCATTCTTTTATTCAATGCGACGGATTTCAAATTAGAGGATTTACGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCGGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTAGCCCCCCTAAACAAGAGCGATTTAGACAAGCTTTGCACTAAA
GCTTTAACATTACTCAAAAAACAAATAGAGCCTAGCGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGATGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAGATCCTATCACTTTAGAAACGCTGCAATCCTTACGGCCTCATA
GCCTAAATGATGGATCTTATAGCGATGATACGCATTATAATCTTACTAGCGCTCTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTACTATCTAGCACGCTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGGCTGGTGGT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTAAATTTAGCCGCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGTTCGCCCAAGTCTAACACGGCCTAT
AGAGCGATCAATCAGGCTTTGGATTATATTCAAAAAGGCTTACTCTACCCCATTCCTAAACACCTGCTGCCTAACGCTAA
AGACTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(168-237)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

37.379

100

0.394