Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   MPG79_RS04990 Genome accession   NZ_CP094128
Coordinates   1055510..1056685 (+) Length   391 a.a.
NCBI ID   WP_128480033.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe055     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1050510..1061685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG79_RS04965 (MPG79_04965) - 1050830..1051726 (+) 897 WP_000697547.1 OriC activity response regulator -
  MPG79_RS04970 (MPG79_04970) - 1051951..1052817 (+) 867 WP_073503596.1 5'-3' exonuclease -
  MPG79_RS04975 (MPG79_04975) - 1052839..1054098 (-) 1260 WP_245107021.1 outer membrane family protein -
  MPG79_RS04980 (MPG79_04980) - 1054266..1055132 (+) 867 WP_096392359.1 DnaJ C-terminal domain-containing protein -
  MPG79_RS04985 (MPG79_04985) - 1055142..1055513 (+) 372 WP_000333004.1 helix-turn-helix transcriptional regulator -
  MPG79_RS04990 (MPG79_04990) rarA 1055510..1056685 (+) 1176 WP_128480033.1 replication-associated recombination protein A Machinery gene
  MPG79_RS04995 (MPG79_04995) fur 1056845..1057297 (+) 453 WP_000824985.1 ferric iron uptake transcriptional regulator -
  MPG79_RS05000 (MPG79_05000) - 1057317..1057814 (-) 498 WP_000780295.1 DUF2147 domain-containing protein -
  MPG79_RS05005 (MPG79_05005) - 1057811..1058347 (-) 537 WP_245107023.1 YhcH/YjgK/YiaL family protein -
  MPG79_RS05010 (MPG79_05010) fliY 1058375..1059238 (-) 864 WP_245107026.1 flagellar motor switch protein FliY -
  MPG79_RS05015 (MPG79_05015) fliM 1059242..1060306 (-) 1065 WP_000763605.1 flagellar motor switch protein FliM -
  MPG79_RS05020 (MPG79_05020) - 1060299..1061075 (-) 777 WP_245107029.1 RNA polymerase sigma factor FliA -
  MPG79_RS05025 (MPG79_05025) - 1061053..1061367 (-) 315 WP_000867999.1 hypothetical protein -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43879.47 Da        Isoelectric Point: 7.8110

>NTDB_id=575611 MPG79_RS04990 WP_128480033.1 1055510..1056685(+) (rarA) [Helicobacter pylori strain Hpfe055]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDKLCAK
ALTLLKKQIEPSAKTYLLNNSAGDARALLNLLDLSAKIEDPITLETLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVVFASEDIGNANPNALNLAASCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDYIQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=575611 MPG79_RS04990 WP_128480033.1 1055510..1056685(+) (rarA) [Helicobacter pylori strain Hpfe055]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATCTAATAGGCAAAGACGCCCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCTCATGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATCGCCCGCATGCTAGAGCGCCCCATTCTTTTATTCAATGCGACGGATTTCAAATTAGAGGATTTACGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCGGTGGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGTACGCAAGATCCTAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAACAAGAGCGATTTAGACAAGCTTTGCGCTAAA
GCTTTAACATTACTCAAAAAACAAATAGAGCCTAGCGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGATGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAGATAGAAGATCCTATCACTTTAGAAACGCTGCAATCCTTACGGCCTCATA
GCCTGAATGACGGATCTTATAGCGATGATACGCATTATAATCTTACTAGCGCATTAATTAAGTCTTTAAGAGGAAGCGAT
GAAAACGCTTCCATCTACTATCTAGCGCGCTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGGTTGGTGGT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTTAATTTAGCCGCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGTTCGCCCAAGTCTAACACGGCTTAT
AGAGCGATCAATCAGGCTTTGGATTATATTCAAAAAGGCTCACTCTACCCCATTCCTAAACACCTGCTGCCTAACGCTAA
AGACTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(168-237)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

37.379

100

0.394