Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   MPG06_RS05325 Genome accession   NZ_CP094126
Coordinates   1123078..1124253 (+) Length   391 a.a.
NCBI ID   WP_154479292.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe056     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1118078..1129253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG06_RS05300 (MPG06_05300) - 1118339..1119235 (+) 897 WP_000697547.1 OriC activity response regulator -
  MPG06_RS05305 (MPG06_05305) - 1119460..1120326 (+) 867 WP_245058471.1 5'-3' exonuclease -
  MPG06_RS05310 (MPG06_05310) - 1120416..1121666 (-) 1251 WP_245057294.1 outer membrane family protein -
  MPG06_RS05315 (MPG06_05315) - 1121834..1122700 (+) 867 WP_245057296.1 DnaJ C-terminal domain-containing protein -
  MPG06_RS05320 (MPG06_05320) - 1122710..1123081 (+) 372 WP_000332994.1 helix-turn-helix transcriptional regulator -
  MPG06_RS05325 (MPG06_05325) rarA 1123078..1124253 (+) 1176 WP_154479292.1 replication-associated recombination protein A Machinery gene
  MPG06_RS05330 (MPG06_05330) fur 1124412..1124864 (+) 453 WP_000824986.1 ferric iron uptake transcriptional regulator -
  MPG06_RS05335 (MPG06_05335) - 1124884..1125381 (-) 498 WP_245057298.1 DUF2147 domain-containing protein -
  MPG06_RS05340 (MPG06_05340) - 1125378..1125914 (-) 537 WP_245057300.1 YhcH/YjgK/YiaL family protein -
  MPG06_RS05345 (MPG06_05345) fliY 1125943..1126806 (-) 864 WP_245057301.1 flagellar motor switch protein FliY -
  MPG06_RS05350 (MPG06_05350) fliM 1126810..1127874 (-) 1065 WP_220907139.1 flagellar motor switch protein FliM -
  MPG06_RS05355 (MPG06_05355) - 1127867..1128643 (-) 777 WP_245057302.1 RNA polymerase sigma factor FliA -
  MPG06_RS05360 (MPG06_05360) - 1128621..1128935 (-) 315 WP_000867999.1 hypothetical protein -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43893.50 Da        Isoelectric Point: 7.8110

>NTDB_id=575571 MPG06_RS05325 WP_154479292.1 1123078..1124253(+) (rarA) [Helicobacter pylori strain Hpfe056]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDKLCAK
ALTLLKKQIEPSAKTYLLNNSAGDARALLNLLDLSAKIEDPITLETLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDYIQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=575571 MPG06_RS05325 WP_154479292.1 1123078..1124253(+) (rarA) [Helicobacter pylori strain Hpfe056]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATTTAATAGGGAAAGACGCCCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCCCACGCCTTTTTCTATGGCCCTCCTGGCGTGGGAAAAACAAGCCTGG
CTCAAATCATCGCCCGCATGCTAGAGCGCCCCATTCTTTTATTCAATGCGACAGATTTCAAATTAGAGGATTTACGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCGGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCTTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAACAAGAGCGATTTAGACAAGCTTTGCGCTAAA
GCTTTAACATTGCTCAAAAAACAAATAGAGCCTAGCGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGATGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAGATCCTATCACTTTAGAAACGCTGCAATCCTTACGGCCTCATA
GCCTAAATGACGGATCTTATAGCGATGATACGCATTATAATCTTACTAGCGCATTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATTTATTATCTGGCACGCTTGATTGCTGGCGGGGAAAATCCGGAATTTATCGCCAGAAGGCTGGTGAT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCTCTAAATTTAGCCGCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATCTGGCCTGTTCGCCCAAGTCTAACACGGCCTAT
AGAGCGATCAATCAGGCTTTGGATTATATTCAAAAAGGCTCACTCTACCCCATTCCTAAACACCTGCTGCCTAACGCTAA
AGACTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(168-237)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

37.136

100

0.391