Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   KNL20_RS06860 Genome accession   NZ_CP076458
Coordinates   1532112..1533947 (+) Length   611 a.a.
NCBI ID   WP_230399853.1    Uniprot ID   -
Organism   Novisyntrophococcus fermenticellae strain JN500902     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1527112..1538947
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KNL20_RS06845 - 1528769..1529353 (+) 585 WP_230399851.1 GNAT family N-acetyltransferase -
  KNL20_RS06850 - 1529523..1530017 (+) 495 WP_230400058.1 MarR family winged helix-turn-helix transcriptional regulator -
  KNL20_RS06855 - 1530010..1532115 (+) 2106 WP_230399852.1 ABC transporter ATP-binding protein -
  KNL20_RS06860 rcrQ 1532112..1533947 (+) 1836 WP_230399853.1 ABC transporter ATP-binding protein Regulator
  KNL20_RS06865 - 1534103..1535314 (+) 1212 WP_230399854.1 6-phosphofructokinase -
  KNL20_RS06870 - 1535385..1536821 (+) 1437 WP_230399855.1 acyl-CoA carboxylase subunit beta -
  KNL20_RS06875 - 1536836..1537597 (+) 762 WP_230399856.1 OadG family transporter subunit -
  KNL20_RS06880 - 1537612..1538001 (+) 390 WP_230399857.1 biotin/lipoyl-containing protein -

Sequence

Protein


Download         Length: 611 a.a.        Molecular weight: 68772.67 Da        Isoelectric Point: 6.5195

>NTDB_id=575553 KNL20_RS06860 WP_230399853.1 1532112..1533947(+) (rcrQ) [Novisyntrophococcus fermenticellae strain JN500902]
MSERKRPRAMGGPRGAVAVEKANDFKGAMKDIIKYISRYKIRLIIMLICAVIGTVFSIVGPKIMGKATTELFNGLVRKVN
QTGSIDFDKILRILLFTLGLYAVSALFSFIQGFVMTGISNDVSYSLRRDISKKINRMPLKYFESRTYGEVLSRITNDVDT
LQQSLNQSITQLITSVTTLIGVFIMMLSINIWMTLCALVILPISFVIIGQVMKHSQKFFQRQQSYLGDVNGQVEEIYAGQ
NVVKAFNKEKDVIDTFTKSNDQLYESAWKSQFFSGMMMPIMGFVGNVGYVMVALLGGFLVIKNSIEVGDIQSFFQYIRNF
TQPIQQIAQVSNLLQSSAAAAERVFEFLNEEEEIQDVEHPVSIEGLKGEVTFEHVAFGYDPEKIIIQDFSAHVKQGQKIA
IVGPTGAGKTTMVKLLMRFYDVNKGSILLDDHNIKDFKRNELREMFGMVLQDTWLFSGTIMENIRYGRLDATDEEVMEAA
KAAHAYKFIMQQPEGFQTIINEESTNISQGQKQLITIARAILADNNILILDEATSSVDTRTEILIQKAMDYLMKGRTSFV
IAHRLSTIRDADIILVMKDGDIIEQGSHEELLSANGFYAQLYNSQFEKVTA

Nucleotide


Download         Length: 1836 bp        

>NTDB_id=575553 KNL20_RS06860 WP_230399853.1 1532112..1533947(+) (rcrQ) [Novisyntrophococcus fermenticellae strain JN500902]
ATGAGTGAACGAAAAAGACCAAGAGCTATGGGCGGTCCCCGCGGTGCAGTTGCGGTGGAAAAGGCCAATGACTTTAAAGG
TGCCATGAAAGATATTATCAAGTATATCTCCAGATACAAAATCAGGCTTATTATTATGCTTATCTGTGCTGTCATAGGTA
CGGTATTTTCGATTGTGGGCCCTAAGATTATGGGAAAAGCTACAACAGAATTGTTCAATGGCCTGGTCAGGAAGGTCAAT
CAGACGGGTTCCATTGACTTCGATAAGATATTAAGAATTTTGCTATTTACGTTAGGTCTGTACGCAGTCAGTGCCCTGTT
TTCATTTATTCAGGGATTTGTTATGACGGGAATTTCCAACGATGTAAGCTATTCCCTGCGTCGTGACATTTCGAAAAAAA
TTAACAGGATGCCTTTGAAATACTTTGAAAGCAGGACATATGGAGAAGTGCTGTCCAGGATAACAAATGACGTGGATACG
TTACAGCAGAGTCTGAATCAGAGTATTACACAGCTGATTACCTCAGTAACCACGCTGATTGGTGTGTTTATCATGATGCT
GTCCATCAATATCTGGATGACCCTTTGCGCATTGGTGATTCTTCCGATTTCTTTCGTAATTATCGGCCAGGTCATGAAGC
ATTCTCAAAAGTTCTTCCAGCGTCAGCAAAGCTATCTGGGAGATGTCAATGGTCAGGTAGAGGAGATCTATGCAGGACAG
AATGTGGTAAAGGCCTTTAACAAAGAAAAAGACGTGATTGATACTTTCACAAAATCCAATGACCAGCTGTATGAATCGGC
ATGGAAATCTCAGTTCTTTTCAGGAATGATGATGCCGATTATGGGGTTTGTCGGCAATGTCGGATATGTTATGGTTGCAC
TTCTCGGCGGGTTTCTTGTAATAAAGAACTCCATCGAGGTAGGTGATATCCAGTCATTTTTCCAGTATATACGAAACTTT
ACGCAGCCAATCCAGCAGATCGCCCAGGTAAGCAATCTCCTTCAGTCCTCTGCAGCGGCCGCCGAGCGGGTTTTTGAATT
CTTGAACGAGGAAGAAGAAATTCAGGATGTGGAGCACCCGGTTTCGATTGAAGGACTGAAAGGAGAGGTTACTTTTGAAC
ATGTAGCCTTCGGCTATGATCCTGAGAAAATCATTATTCAGGATTTTTCCGCCCATGTGAAACAGGGGCAGAAAATTGCA
ATCGTAGGTCCGACAGGAGCCGGTAAAACAACCATGGTGAAGCTGTTGATGCGTTTTTACGATGTGAACAAAGGCTCTAT
ATTGTTGGATGACCATAACATCAAAGATTTTAAGCGGAATGAGCTCCGTGAAATGTTCGGGATGGTGCTGCAGGATACCT
GGCTGTTTTCAGGCACGATTATGGAAAACATCCGGTATGGCCGTTTGGATGCCACGGACGAGGAGGTAATGGAGGCTGCT
AAGGCAGCGCATGCGTATAAGTTTATCATGCAGCAGCCGGAGGGCTTTCAGACCATAATTAACGAGGAATCCACCAACAT
TTCCCAGGGACAGAAGCAGCTGATTACGATTGCGAGAGCAATTCTGGCTGACAACAATATTCTGATTCTCGATGAGGCAA
CCTCCTCCGTGGATACGAGAACAGAGATTCTGATTCAAAAAGCCATGGATTATCTGATGAAGGGCAGAACCAGTTTTGTC
ATTGCCCACAGACTTTCTACAATCCGTGATGCGGATATTATTCTGGTTATGAAGGATGGGGATATCATCGAACAGGGCAG
CCATGAAGAATTGCTTTCTGCAAATGGCTTCTATGCACAGCTTTATAACAGCCAGTTTGAAAAAGTGACAGCATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(43-323)

ABC transporter (ABC_tran)

(387-535)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

50.678

96.563

0.489