Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   MPG73_RS05240 Genome accession   NZ_CP094122
Coordinates   1101480..1102655 (+) Length   391 a.a.
NCBI ID   WP_245056698.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe058     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1096480..1107655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG73_RS05215 (MPG73_05215) - 1096740..1097636 (+) 897 WP_245056692.1 response regulator -
  MPG73_RS05220 (MPG73_05220) - 1097862..1098728 (+) 867 WP_245057891.1 5'-3' exonuclease -
  MPG73_RS05225 (MPG73_05225) - 1098818..1100068 (-) 1251 WP_245056694.1 outer membrane family protein -
  MPG73_RS05230 (MPG73_05230) - 1100236..1101102 (+) 867 WP_245056696.1 DnaJ C-terminal domain-containing protein -
  MPG73_RS05235 (MPG73_05235) - 1101112..1101483 (+) 372 WP_000332994.1 helix-turn-helix transcriptional regulator -
  MPG73_RS05240 (MPG73_05240) rarA 1101480..1102655 (+) 1176 WP_245056698.1 replication-associated recombination protein A Machinery gene
  MPG73_RS05245 (MPG73_05245) fur 1102816..1103268 (+) 453 WP_000824985.1 ferric iron uptake transcriptional regulator -
  MPG73_RS05250 (MPG73_05250) - 1103288..1103785 (-) 498 WP_245056699.1 DUF2147 domain-containing protein -
  MPG73_RS05255 (MPG73_05255) - 1103782..1104318 (-) 537 WP_245056700.1 YhcH/YjgK/YiaL family protein -
  MPG73_RS05260 (MPG73_05260) fliY 1104346..1105209 (-) 864 WP_245056701.1 flagellar motor switch protein FliY -
  MPG73_RS05265 (MPG73_05265) fliM 1105213..1106277 (-) 1065 WP_245056702.1 flagellar motor switch protein FliM -
  MPG73_RS05270 (MPG73_05270) - 1106270..1107046 (-) 777 WP_245056703.1 RNA polymerase sigma factor FliA -
  MPG73_RS05275 (MPG73_05275) - 1107024..1107338 (-) 315 WP_000867999.1 hypothetical protein -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43784.27 Da        Isoelectric Point: 7.5253

>NTDB_id=575489 MPG73_RS05240 WP_245056698.1 1101480..1102655(+) (rarA) [Helicobacter pylori strain Hpfe058]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAHALERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKAQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDKLCAK
ALTLLKKQIEPSAKTYLLNNSAGDARALLNLLDLSAKIEDPITLETLQSLRPHSPNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVVFASEDIGNANPNALNLATSCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDYIQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=575489 MPG73_RS05240 WP_245056698.1 1101480..1102655(+) (rarA) [Helicobacter pylori strain Hpfe058]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATCTAATAGGCAAAGACGCCCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCCCATGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATCGCCCACGCACTAGAGCGCCCCATTCTTTTATTCAATGCGACGGATTTCAAATTAGAGGATTTACGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCGGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAGCCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCCAATTACAGCCTAA
GCCATGCGATCCGTTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAACAAGAGCGATTTAGACAAGCTTTGCGCTAAA
GCTTTAACATTACTCAAAAAACAAATAGAGCCTAGCGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGATGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAGATCCTATCACTTTAGAAACGCTGCAATCCTTACGGCCTCATA
GCCCAAATGACGGATCTTATAGCGATGATACGCATTATAATCTTACTAGCGCACTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTATTATCTAGCACGCTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCTAGAAGGCTGGTGGT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTAAATTTAGCCACTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGCTCGCCCAAGTCTAACACGGCTTAT
AGAGCGATCAATCAGGCTTTGGATTATATTCAAAAAGGCTCACTCTACCCCATTCCTAAACACCTGCTGCCTAACGCTAA
AGACTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)

AAA C-terminal domain (AAA_assoc_2)

(168-237)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

37.379

100

0.394