Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   KOM03_RS13405 Genome accession   NZ_CP076450
Coordinates   2657901..2658680 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain GMEKP1     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2652901..2663680
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KOM03_RS13385 (KOM03_13385) trmFO 2653588..2654895 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  KOM03_RS13390 (KOM03_13390) xerC 2654965..2655882 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  KOM03_RS13395 (KOM03_13395) hslV 2655898..2656443 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  KOM03_RS13400 (KOM03_13400) hslU 2656451..2657863 (+) 1413 WP_254894347.1 HslU--HslV peptidase ATPase subunit -
  KOM03_RS13405 (KOM03_13405) codY 2657901..2658680 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  KOM03_RS13410 (KOM03_13410) flgB 2659034..2659423 (+) 390 WP_060561695.1 flagellar basal body rod protein FlgB -
  KOM03_RS13415 (KOM03_13415) flgC 2659423..2659875 (+) 453 WP_015239851.1 flagellar basal body rod protein FlgC -
  KOM03_RS13420 (KOM03_13420) fliE 2659886..2660206 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  KOM03_RS13425 (KOM03_13425) fliF 2660249..2661859 (+) 1611 WP_012117551.1 flagellar basal-body MS-ring/collar protein FliF -
  KOM03_RS13430 (KOM03_13430) fliG 2661872..2662888 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  KOM03_RS13435 (KOM03_13435) fliH 2662881..2663636 (+) 756 WP_060561694.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=575484 KOM03_RS13405 WP_003154263.1 2657901..2658680(+) (codY) [Bacillus velezensis strain GMEKP1]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=575484 KOM03_RS13405 WP_003154263.1 2657901..2658680(+) (codY) [Bacillus velezensis strain GMEKP1]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGTATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCACGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGATCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGAACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471