Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   MPG25_RS05035 Genome accession   NZ_CP094121
Coordinates   1071510..1072685 (+) Length   391 a.a.
NCBI ID   WP_000060238.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe059     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1066510..1077685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG25_RS05010 (MPG25_05010) - 1066839..1067735 (+) 897 WP_000697547.1 OriC activity response regulator -
  MPG25_RS05015 (MPG25_05015) - 1067960..1068826 (+) 867 WP_080359927.1 5'-3' exonuclease -
  MPG25_RS05020 (MPG25_05020) - 1068848..1070098 (-) 1251 WP_245018466.1 outer membrane family protein -
  MPG25_RS05025 (MPG25_05025) - 1070266..1071132 (+) 867 WP_245018467.1 DnaJ C-terminal domain-containing protein -
  MPG25_RS05030 (MPG25_05030) - 1071142..1071513 (+) 372 WP_039704360.1 helix-turn-helix transcriptional regulator -
  MPG25_RS05035 (MPG25_05035) rarA 1071510..1072685 (+) 1176 WP_000060238.1 replication-associated recombination protein A Machinery gene
  MPG25_RS05040 (MPG25_05040) fur 1072846..1073298 (+) 453 WP_000824985.1 ferric iron uptake transcriptional regulator -
  MPG25_RS05045 (MPG25_05045) - 1073318..1073815 (-) 498 WP_245018468.1 DUF2147 domain-containing protein -
  MPG25_RS05050 (MPG25_05050) - 1073812..1074348 (-) 537 WP_245018469.1 YhcH/YjgK/YiaL family protein -
  MPG25_RS05055 (MPG25_05055) fliY 1074377..1075240 (-) 864 WP_245018470.1 flagellar motor switch protein FliY -
  MPG25_RS05060 (MPG25_05060) fliM 1075244..1076308 (-) 1065 WP_000763605.1 flagellar motor switch protein FliM -
  MPG25_RS05065 (MPG25_05065) - 1076301..1077077 (-) 777 WP_000602378.1 RNA polymerase sigma factor FliA -
  MPG25_RS05070 (MPG25_05070) - 1077055..1077369 (-) 315 WP_000868000.1 hypothetical protein -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43909.50 Da        Isoelectric Point: 7.8110

>NTDB_id=575448 MPG25_RS05035 WP_000060238.1 1071510..1072685(+) (rarA) [Helicobacter pylori strain Hpfe059]
MSLTSLLNPKSLEDFLGQEHLIGKDTPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDKLCAK
ALTLLKKQIEPSAKTYLLNNSAGDARALLNLLDLSAKIEDPITLETLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVVFASEDIGNANPNALNLAASCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDYIQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=575448 MPG25_RS05035 WP_000060238.1 1071510..1072685(+) (rarA) [Helicobacter pylori strain Hpfe059]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATCTAATAGGCAAAGACACCCC
CTTATTTAAAGCCCTGCAATCCAAACACTTCCCCCACGCCTTTTTCTATGGCCCTCCTGGCGTGGGAAAAACAAGCCTGG
CTCAAATCATCGCCCGCATGCTAGAGCGCCCCATTCTTTTATTCAATGCGACGGATTTCAAATTAGAGGATTTACGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCGGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTGGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAACAAGAGCGATTTAGACAAGCTTTGCGCTAAA
GCTTTAACATTGCTCAAAAAACAAATAGAGCCTAGCGCTAAAACCTATCTTTTAAACAACAGTGCTGGCGATGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAGATCCTATCACTTTAGAAACGCTGCAATCCTTACGGCCTCATA
GCCTAAATGATGGATCTTATAGCGATGATACGCATTATAACCTTACTAGCGCTCTAATCAAGTCTTTAAGGGGGAGCGAT
GAAAACGCTTCCATCTATTATCTGGCGCGCTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGGCTGGTGGT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTAAATTTAGCCGCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATTTAGCTTGTTCGCCCAAGTCTAACACGGCTTAT
AGAGCGATCAACCAGGCTTTGGATTATATTCAAAAAGGCTCACTCTACCCCATTCCTAAACACCTGCTGCCTAACGCTAA
AGACTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(168-237)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

37.379

100

0.394