Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   MPG74_RS05200 Genome accession   NZ_CP094120
Coordinates   1093248..1094423 (+) Length   391 a.a.
NCBI ID   WP_245068949.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe061     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1088248..1099423
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG74_RS05175 (MPG74_05175) - 1088577..1089473 (+) 897 WP_245068941.1 response regulator -
  MPG74_RS05180 (MPG74_05180) - 1089698..1090564 (+) 867 WP_245070300.1 5'-3' exonuclease -
  MPG74_RS05185 (MPG74_05185) - 1090586..1091836 (-) 1251 WP_245068943.1 outer membrane family protein -
  MPG74_RS05190 (MPG74_05190) - 1092004..1092870 (+) 867 WP_245068945.1 DnaJ C-terminal domain-containing protein -
  MPG74_RS05195 (MPG74_05195) - 1092880..1093251 (+) 372 WP_245068947.1 helix-turn-helix transcriptional regulator -
  MPG74_RS05200 (MPG74_05200) rarA 1093248..1094423 (+) 1176 WP_245068949.1 replication-associated recombination protein A Machinery gene
  MPG74_RS05205 (MPG74_05205) fur 1094583..1095035 (+) 453 WP_000824985.1 ferric iron uptake transcriptional regulator -
  MPG74_RS05210 (MPG74_05210) - 1095055..1095552 (-) 498 WP_245068951.1 DUF2147 domain-containing protein -
  MPG74_RS05215 (MPG74_05215) - 1095549..1096085 (-) 537 WP_245068953.1 YhcH/YjgK/YiaL family protein -
  MPG74_RS05220 (MPG74_05220) fliY 1096113..1096976 (-) 864 WP_245068955.1 flagellar motor switch protein FliY -
  MPG74_RS05225 (MPG74_05225) fliM 1096980..1098044 (-) 1065 WP_024421782.1 flagellar motor switch protein FliM -
  MPG74_RS05230 (MPG74_05230) - 1098037..1098813 (-) 777 WP_000602378.1 RNA polymerase sigma factor FliA -
  MPG74_RS05235 (MPG74_05235) - 1098791..1099105 (-) 315 WP_000867999.1 hypothetical protein -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43784.35 Da        Isoelectric Point: 7.5005

>NTDB_id=575409 MPG74_RS05200 WP_245068949.1 1093248..1094423(+) (rarA) [Helicobacter pylori strain Hpfe061]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAHMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDKLCAK
ALTLLKKQIEPSAKTYLLNNSAGDARALLNLLDLSAKIEDPITLETLQSLRPHSPNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVVFASEDIGNANPNALNLAASCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDCIQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=575409 MPG74_RS05200 WP_245068949.1 1093248..1094423(+) (rarA) [Helicobacter pylori strain Hpfe061]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATCTAATAGGCAAAGACGCCCC
CTTATTTAAAGCCTTACAATCCAAACACTTCCCCCATGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATCGCCCACATGCTAGAGCGCCCCATTCTTTTATTCAATGCGACAGATTTCAAATTAGAGGATTTGCGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCCGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCTTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAACAAAAGCGATTTAGACAAACTTTGCGCCAAA
GCTTTAACATTGCTCAAAAAACAAATAGAGCCTAGCGCTAAAACCTATCTTTTGAACAACAGCGCTGGCGATGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGTGCTAAAATAGAAGATCCTATCACTTTAGAAACGCTGCAATCCTTACGGCCTCATA
GCCCAAATGACGGATCTTATAGCGATGATACGCATTATAATCTTACTAGCGCATTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTATTATCTAGCGCGTTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGGCTGGTGGT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCTCTAAATTTAGCCGCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGTTCGCCCAAGTCTAACACGGCTTAT
AGAGCGATCAATCAGGCTTTGGATTGTATTCAAAAAGGCTCACTCTACCCCATTCCTAAACACCTGCTGCCTAACGCTAA
AGACTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)

AAA C-terminal domain (AAA_assoc_2)

(168-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

37.379

100

0.394