Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   MPG74_RS00675 Genome accession   NZ_CP094120
Coordinates   139435..139701 (+) Length   88 a.a.
NCBI ID   WP_220890596.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe061     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 134435..144701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG74_RS00655 (MPG74_00655) - 136514..137292 (+) 779 Protein_127 hypothetical protein -
  MPG74_RS00660 (MPG74_00660) - 137312..137605 (+) 294 WP_220997280.1 hypothetical protein -
  MPG74_RS00665 (MPG74_00665) - 137612..139135 (+) 1524 WP_245069665.1 toprim domain-containing protein -
  MPG74_RS00670 (MPG74_00670) - 139132..139434 (+) 303 WP_096424558.1 virB2 type IV secretion protein -
  MPG74_RS00675 (MPG74_00675) comB3 139435..139701 (+) 267 WP_220890596.1 virB3 type IV secretion protein Machinery gene
  MPG74_RS00680 (MPG74_00680) - 139748..142118 (+) 2371 Protein_132 VirB4 family type IV secretion/conjugal transfer ATPase -
  MPG74_RS07785 (MPG74_00690) - 142121..144158 (+) 2038 Protein_133 type IA DNA topoisomerase -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 10189.01 Da        Isoelectric Point: 4.5349

>NTDB_id=575391 MPG74_RS00675 WP_220890596.1 139435..139701(+) (comB3) [Helicobacter pylori strain Hpfe061]
MALYIVCVESINIREISKRETFLGLNLDSWIVSFLMSAWLLSFQPLYAMGLMASCVFVFYILEFFDEDITAILHALFTLR
TGARNYYA

Nucleotide


Download         Length: 267 bp        

>NTDB_id=575391 MPG74_RS00675 WP_220890596.1 139435..139701(+) (comB3) [Helicobacter pylori strain Hpfe061]
ATGGCATTGTATATTGTTTGTGTTGAAAGTATCAACATTAGAGAAATCAGCAAAAGAGAAACTTTTTTGGGATTAAACTT
GGATAGCTGGATTGTTAGTTTCTTAATGTCGGCATGGTTACTTTCATTCCAACCACTTTATGCTATGGGTTTAATGGCTA
GTTGTGTGTTTGTATTCTACATTTTAGAATTTTTTGATGAAGATATAACAGCCATTTTGCATGCACTTTTCACATTAAGG
ACAGGAGCTAGAAATTATTATGCTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

42.169

94.318

0.398