Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   MPG78_RS06600 Genome accession   NZ_CP094119
Coordinates   1378571..1378831 (+) Length   86 a.a.
NCBI ID   WP_000602756.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe064     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1373571..1383831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG78_RS06580 (MPG78_06580) - 1374731..1375474 (+) 744 WP_245039999.1 carbonic anhydrase -
  MPG78_RS06585 (MPG78_06585) - 1375587..1376351 (+) 765 WP_245040001.1 hypothetical protein -
  MPG78_RS06590 (MPG78_06590) - 1376362..1378278 (+) 1917 WP_245040003.1 toprim domain-containing protein -
  MPG78_RS06595 (MPG78_06595) - 1378268..1378570 (+) 303 WP_000649842.1 TrbC/VirB2 family protein -
  MPG78_RS06600 (MPG78_06600) comB3 1378571..1378831 (+) 261 WP_000602756.1 hypothetical protein Machinery gene
  MPG78_RS06605 (MPG78_06605) - 1378844..1381325 (+) 2482 Protein_1292 VirB4 family type IV secretion system protein -
  MPG78_RS06610 (MPG78_06610) - 1381318..1383252 (+) 1935 WP_245041173.1 type IA DNA topoisomerase -
  MPG78_RS07770 - 1383252..1383380 (+) 129 WP_001185489.1 hypothetical protein -

Sequence

Protein


Download         Length: 86 a.a.        Molecular weight: 10154.04 Da        Isoelectric Point: 4.6082

>NTDB_id=575381 MPG78_RS06600 WP_000602756.1 1378571..1378831(+) (comB3) [Helicobacter pylori strain Hpfe064]
MILNYVETINVREISKKEKFLKLNMNSWIISFLSASFLFVWSLLYGVVLLVALITMFYILEFFDEDITNIILANLTLKND
TKEYYA

Nucleotide


Download         Length: 261 bp        

>NTDB_id=575381 MPG78_RS06600 WP_000602756.1 1378571..1378831(+) (comB3) [Helicobacter pylori strain Hpfe064]
ATGATTTTAAATTATGTAGAGACCATCAATGTTAGAGAAATATCTAAAAAAGAGAAGTTTTTAAAGCTTAATATGAATAG
TTGGATCATTTCTTTTTTGAGCGCTTCTTTCTTATTTGTGTGGTCTTTATTATATGGCGTGGTGCTATTGGTGGCATTAA
TAACAATGTTTTACATACTAGAATTTTTTGATGAAGATATTACAAACATTATTTTGGCAAACCTAACGCTAAAAAATGAC
ACTAAAGAATATTATGCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

44.828

100

0.453