Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   MPG78_RS03140 Genome accession   NZ_CP094119
Coordinates   631313..632488 (-) Length   391 a.a.
NCBI ID   WP_245040866.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe064     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 626313..637488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG78_RS03105 (MPG78_03105) - 626631..626945 (+) 315 WP_180593739.1 hypothetical protein -
  MPG78_RS03110 (MPG78_03110) - 626923..627699 (+) 777 WP_000602378.1 RNA polymerase sigma factor FliA -
  MPG78_RS03115 (MPG78_03115) fliM 627692..628756 (+) 1065 WP_000763605.1 flagellar motor switch protein FliM -
  MPG78_RS03120 (MPG78_03120) fliY 628760..629623 (+) 864 WP_245040860.1 flagellar motor switch protein FliY -
  MPG78_RS03125 (MPG78_03125) - 629651..630187 (+) 537 WP_245040862.1 YhcH/YjgK/YiaL family protein -
  MPG78_RS03130 (MPG78_03130) - 630184..630681 (+) 498 WP_245040864.1 DUF2147 domain-containing protein -
  MPG78_RS03135 (MPG78_03135) fur 630701..631153 (-) 453 WP_000824985.1 ferric iron uptake transcriptional regulator -
  MPG78_RS03140 (MPG78_03140) rarA 631313..632488 (-) 1176 WP_245040866.1 replication-associated recombination protein A Machinery gene
  MPG78_RS03145 (MPG78_03145) - 632485..632856 (-) 372 WP_039704360.1 helix-turn-helix transcriptional regulator -
  MPG78_RS03150 (MPG78_03150) - 632866..633732 (-) 867 WP_245040868.1 DnaJ C-terminal domain-containing protein -
  MPG78_RS03155 (MPG78_03155) - 633900..635150 (+) 1251 WP_245040870.1 outer membrane family protein -
  MPG78_RS03160 (MPG78_03160) - 635240..636106 (-) 867 WP_245041138.1 5'-3' exonuclease -
  MPG78_RS03165 (MPG78_03165) - 636332..637228 (-) 897 WP_000697547.1 OriC activity response regulator -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43994.65 Da        Isoelectric Point: 8.1225

>NTDB_id=575369 MPG78_RS03140 WP_245040866.1 631313..632488(-) (rarA) [Helicobacter pylori strain Hpfe064]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHTFFYGPPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDKLCTK
ALILLKKQIEPSAKTYLLNNSAGDARALLNLLDLSAKIENPITLETLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLATSCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDYIQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=575369 MPG78_RS03140 WP_245040866.1 631313..632488(-) (rarA) [Helicobacter pylori strain Hpfe064]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATCTAATAGGCAAAGACGCCCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCCCATACCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATTGCCCGCATGCTAGAGCGCCCCATTCTTTTATTCAATGCGACGGATTTCAAATTAGAGGATTTACGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCGGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAACAAAAGCGATTTAGACAAGCTTTGCACTAAA
GCTTTAATATTGCTCAAAAAACAAATAGAGCCTAGCGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGATGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAAATCCTATCACTTTAGAAACGCTGCAATCCTTACGGCCTCATA
GCCTGAATGACGGATCTTATAGCGATGATACGCATTATAATCTTACTAGTGCTTTAATCAAATCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTATTATTTGGCGCGCTTGATTGCTGGCGGGGAAAACCCAGAGTTTATCGCCAGAAGGCTAGTGAT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTAAATTTAGCCACTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATCTATCTGGCTTGTTCGCCCAAGTCTAACACGGCTTAT
AGAGCGATCAACCAGGCTTTGGATTATATTCAAAAAGGCTCACTCTACCCCATTCCTAAACACCTGCTGCCTAACGCTAA
AGACTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)

AAA C-terminal domain (AAA_assoc_2)

(168-237)

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

37.136

100

0.391